View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_106 (Length: 240)

Name: NF17063_low_106
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_106
NF17063_low_106
[»] chr3 (11 HSPs)
chr3 (18-230)||(2759047-2759259)
chr3 (18-230)||(2838693-2838908)
chr3 (25-229)||(2768903-2769107)
chr3 (25-230)||(2855910-2856115)
chr3 (25-199)||(2807134-2807305)
chr3 (18-230)||(2818390-2818602)
chr3 (23-198)||(2748863-2749035)
chr3 (35-198)||(2790232-2790395)
chr3 (35-198)||(2797226-2797389)
chr3 (25-118)||(5412831-5412924)
chr3 (156-228)||(5412742-5412814)
[»] scaffold0691 (1 HSPs)
scaffold0691 (18-228)||(6245-6455)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 2759259 - 2759047
Alignment:
Q  18 catatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2759259 catatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctc 2759160  T
Q  118 ttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatg 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2759159 ttcggtagtgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatg 2759060  T
Q  218 tcttgaatctctg 230  Q
    |||||||||||||    
T  2759059 tcttgaatctctg 2759047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 2838693 - 2838908
Alignment:
Q  18 catatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctc 117  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||  |||    
T  2838693 catatatttcttctcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctc 2838792  T
Q  118 ttcggtactg---ttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttg 214  Q
    | | | ||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  2838793 tccaggactgctgttgctgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttg 2838892  T
Q  215 atgtcttgaatctctg 230  Q
    ||||||||||||||||    
T  2838893 atgtcttgaatctctg 2838908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 2769107 - 2768903
Alignment:
Q  25 ttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggta 124  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||| |||||  |||| |  ||    
T  2769107 ttcttctcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctccacta 2769008  T
Q  125 ctgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaa 224  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||  |||||| || ||| ||||| ||||    
T  2769007 ctgttcctgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaa 2768908  T
Q  225 tctct 229  Q
    |||||    
T  2768907 tctct 2768903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 2855910 - 2856115
Alignment:
Q  25 ttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggta 124  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |     
T  2855910 ttcttcttttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctccactg 2856009  T
Q  125 ctgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaa 224  Q
    | ||| ||   | ||||||||||||| || | ||||||||||||||||||||||  ||||||||||||||||||  |||||| || ||||||||| ||||    
T  2856010 cggtttctttggcttgaggatccttgctcgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaa 2856109  T
Q  225 tctctg 230  Q
    ||||||    
T  2856110 tctctg 2856115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 2807305 - 2807134
Alignment:
Q  25 ttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggta 124  Q
    ||||||| |||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||   ||     
T  2807305 ttcttctcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtg 2807206  T
Q  125 ctgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccg 199  Q
    ||||||| ||   |||| ||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||    
T  2807205 ctgttgcggc---ttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccg 2807134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 2818602 - 2818390
Alignment:
Q  18 catatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctc 117  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||  | |||  |||    
T  2818602 catatagttcttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatcctcctgtgtctgactc 2818503  T
Q  118 ttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatg 217  Q
    | |    | ||||||   |   ||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||  |||||| || |||||||    
T  2818502 tccacatccgttgctttggcacgaggatccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatg 2818403  T
Q  218 tcttgaatctctg 230  Q
    || ||||||||||    
T  2818402 tcctgaatctctg 2818390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 2749035 - 2748863
Alignment:
Q  23 agttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcgg 122  Q
    ||||||||||||||| ||||||  || |||| ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| |      
T  2749035 agttcttcttttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctccta 2748936  T
Q  123 tactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattcc 198  Q
    | ||  ||||||   |||| | ||||||||| | |||||||||||||||||||||| | |||||||||||||||||    
T  2748935 tgctaatgctgc---ttgaagttccttgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattcc 2748863  T

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Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 2790395 - 2790232
Alignment:
Q  35 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtactgttgctgc 134  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||  ||||||||| ||||||||| ||| ||  |||||    | ||||||||||    
T  2790395 gggccttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgc 2790296  T
Q  135 tgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattcc 198  Q
    || |||| |||||| ||   | |||||||||||||||||||||| | |||||||||||||||||    
T  2790295 tgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattcc 2790232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 198
Target Start/End: Complemental strand, 2797389 - 2797226
Alignment:
Q  35 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtactgttgctgc 134  Q
    |||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||  |||||    | |||||| |||    
T  2797389 gggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgc 2797290  T
Q  135 tgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattcc 198  Q
    || |||| |||||| ||   | |||||||||||||||||||||| | |||||||||||||||||    
T  2797289 tgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattcc 2797226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 5412924 - 5412831
Alignment:
Q  25 ttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctct 118  Q
    |||||||||||| ||||||| |||||||| ||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  5412924 ttcttcttttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctct 5412831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 5412814 - 5412742
Alignment:
Q  156 ttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctc 228  Q
    ||||||||||||||||||||||| | |||||||||||||||||  |||||| || ||| ||||| ||||||||    
T  5412814 ttgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctc 5412742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 6245 - 6455
Alignment:
Q  18 catatagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctc 117  Q
    |||||| ||| ||| |||||||||| |||||||||| ||| ||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||  |||    
T  6245 catataattcctctcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctc 6344  T
Q  118 ttcggtactgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatg 217  Q
    | | || ||| |||||    |||| |||||  |||||| | |||||||||||||||||||  | ||||| |||||||||||  |||||| |||||| |||    
T  6345 tcctgtgctgctgctgacacttgatgatccaggttcatgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatg 6444  T
Q  218 tcttgaatctc 228  Q
    || ||||||||    
T  6445 tcctgaatctc 6455  T

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