View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_108 (Length: 239)
Name: NF17063_low_108
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_108 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8414074 - 8414297
Alignment:
| Q |
1 |
ttcaagtttccttcaacttaattaaaggttttggagtttgaaatccagcttttgtttttacatatttcagctttggaaatataaccacgttaaaactcct |
100 |
Q |
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| T |
8414074 |
ttcaagtttccttcgacttaattaaaggttttggagtttgaaatccagcttttgtttttacatatttcagctttggaaatataaccacgttgaaactcct |
8414173 |
T |
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| Q |
101 |
aaagcggtcttgtaattactcctcacttgatagccgcatggatatttgatttgttggtgtgcaagtttgaaccctacgattatgcacttctccaaattct |
200 |
Q |
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| T |
8414174 |
aaagcggtcttgtaattactcctcacttgatagccgcatggatatttgatttgttggtgtgcaagtttgaaccctacgattatgcacttctccaaattct |
8414273 |
T |
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| Q |
201 |
tcatcattactagtatcattgtct |
224 |
Q |
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| T |
8414274 |
tcatcattactagtatcattgtct |
8414297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 8436211 - 8436338
Alignment:
| Q |
66 |
ttcagctttggaaatataaccacgttaaaactcct-aaagcggtcttgtaattactcctcacttgatagccgcatggatatttgatttgttggtgtgcaa |
164 |
Q |
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| T |
8436211 |
ttcagcttcggaaatataaccatgttaaaactcttgaaagaggt--tgtaagtacgcctcacttgatagttgcatgaacattcgatttgttgtcatgcaa |
8436308 |
T |
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| Q |
165 |
gtttgaaccctacgattatgcacttctcca |
194 |
Q |
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| T |
8436309 |
gttcgaaccctacgattatgcccttctcca |
8436338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 8377446 - 8377396
Alignment:
| Q |
144 |
atttgatttgttggtgtgcaagtttgaaccctacgattatgcacttctcca |
194 |
Q |
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| T |
8377446 |
atttgattagttggggtgcaagttcgaaccctacgattatacacttttcca |
8377396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8436132 - 8436192
Alignment:
| Q |
1 |
ttcaagtttccttcaacttaattaaaggttttggagtttgaaatccagcttttgtttttaca |
62 |
Q |
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|||||||||||||| |||||||| ||||||||||||| | ||||||| ||| ||||||||| |
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| T |
8436132 |
ttcaagtttccttcggcttaattagaggttttggagttcg-aatccagatttagtttttaca |
8436192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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