View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_11 (Length: 623)
Name: NF17063_low_11
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 80 - 608
Target Start/End: Original strand, 36399577 - 36400108
Alignment:
| Q |
80 |
cagtgggtaaattgagaaacactgaagcaatttgaataagtaatgaaatgttcaaaccctacaaataaacatcgcatccaactaaaaaatagaagtatgt |
179 |
Q |
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| T |
36399577 |
cagtgggtaaattgagaaaaactgaagcaatttgaataagtaatgaaatgttcaaaccctacaaataaacatagcatccaactaaaaaatagaagtatgt |
36399676 |
T |
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| Q |
180 |
gaaatttgtaagaatttgctaccatcaacatagataagataacaacacttcttcaaaacaaaaaa--tcaatatagaaagcacaaataccatcgaaagag |
277 |
Q |
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| T |
36399677 |
gaaatttgtaagaatttgctaccatcaacatagataagataacaacacttcttaaaaaaaaaaaaaatcaatatagaaagcacaaataccatcgaaagag |
36399776 |
T |
|
| Q |
278 |
aaaagtaaaatttataata-tgaatttattgattattcattgattactcaataaagaaaataaaagagtactattcatgaatgaatcagaccactactta |
376 |
Q |
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| T |
36399777 |
aaaagtaaaatttataataatgaatttattgactattcattgattactcaataaagaaaataaaagagtactattcatgaatgaatcagaccactactta |
36399876 |
T |
|
| Q |
377 |
gaaaaacccatttagcttcttgaagaaaagaaggttcatatgccgtggagaaagttcaactttttattttgaataaactctcaaacttagtttatgaact |
476 |
Q |
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| T |
36399877 |
gaaaaacccatttagcttcttgaagaaaagaaggttcatatgccgtggagaaagttcaactttttattttgaataaactctcaaacttagtttatgaact |
36399976 |
T |
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| Q |
477 |
atccccttcaacttagtttataaaacttggtcaagaataaacttaatctgtaaggtatattttagttctcctaaaattcttttaaatatataaagttagt |
576 |
Q |
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| T |
36399977 |
atccccttcaacttagtttataaaacttggtcaagaataaacttaatctgtaaggtatattttagttctcctaaaattcttttaaatatataaagttagt |
36400076 |
T |
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| Q |
577 |
cgttttaattgaagaaatttcaagtctattat |
608 |
Q |
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| T |
36400077 |
cgttttaattgaagaaatttcaagtctattat |
36400108 |
T |
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