View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_110 (Length: 237)
Name: NF17063_low_110
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39130731 - 39130511
Alignment:
| Q |
1 |
tgaagaccaaatgttgttttgaccggcatcaagcaaaatgatattacctgtgtttaagagggaaagctttgagagcttacctgtttgaaattaggagaca |
100 |
Q |
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| T |
39130731 |
tgaagaccaaatgttgttttgaccggcatcaagcaaaaggatattacctgtgtttaagagggaaagctttgagagcttacctgtttgaaattaggagaca |
39130632 |
T |
|
| Q |
101 |
attaggaaatcagaggagataaaattggatatctaaaatcataatatttttcttattaatagacacaatatcaagattgtagtattaggccatgccatag |
200 |
Q |
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| T |
39130631 |
attaggaaatcagaggagataaaattggatatctaaaatcataatatttttattattaatagacacaatatcaagattgtagtattaggccatgccatag |
39130532 |
T |
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| Q |
201 |
tcacataattttgtagggttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39130531 |
tcacataattttgtagggttt |
39130511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 39120793 - 39120723
Alignment:
| Q |
143 |
aatatttttcttattaatagacacaatatcaagattgtagtattaggccatgccatagtcacataattttg |
213 |
Q |
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| T |
39120793 |
aatatttttattattaatagacacaatatcaagattgtagtattaggccataccatagtcacataattttg |
39120723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18660167 - 18660256
Alignment:
| Q |
1 |
tgaagaccaaatgttgttttgaccggcatcaagcaaaatgatattacctgtgtttaagagggaaagctttgagagcttacctgtttgaaa |
90 |
Q |
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| T |
18660167 |
tgaagaccaagtgttgtgttgacccgcatcaagcaagaggatgttacctgtgtttaagaggaaaagctttgagtgcttacctgttggaaa |
18660256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 21132005 - 21132190
Alignment:
| Q |
1 |
tgaagaccaaatgttgttttgaccggcatcaagcaaaatgatattacctgtgtttaagagggaaagctttgagagcttacctgtttgaaattaggagaca |
100 |
Q |
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|||||||||| ||| || |||||| ||||||||||| | ||| ||||| ||||||||||| ||||||||||||||||||||||| ||| ||| | |
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| T |
21132005 |
tgaagaccaagtgtagtgttgacccgcatcaagcaagaggatgttaccattgtttaagaggaaaagctttgagagcttacctgttagaatttataacgag |
21132104 |
T |
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| Q |
101 |
attaggaaatcagaggagat-aaaattggatatctaaaatcataatatttttcttattaatagacacaatatcaagattgtagtat |
185 |
Q |
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| T |
21132105 |
acgaagaaattagaggagataaaaattagatagctagaatgatagtatatttattattgatagacacaatatctagattggagtat |
21132190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21113045 - 21113117
Alignment:
| Q |
1 |
tgaagaccaaatgttgttttgaccggcatcaagcaaaatgatattacctgtgtttaagagggaaagctttgag |
73 |
Q |
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|||||||||| |||| | |||||| ||||| ||||| ||||| |||||||||||||||||| ||||||||||| |
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| T |
21113045 |
tgaagaccaagtgttatgttgacccgcatcgagcaagatgatgttacctgtgtttaagaggaaaagctttgag |
21113117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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