View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_111 (Length: 237)
Name: NF17063_low_111
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_111 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41122258 - 41122034
Alignment:
| Q |
1 |
tacaataagctagtagatttcttacatgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41122258 |
tacaataagctagtagatttcttacatgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagg |
41122159 |
T |
|
| Q |
101 |
gaatcttgcacgcatatccgactcaaaaataattgatttcattgcttcatcttttagatgttcatcatcaatagtctttagcatcttcaccatgttggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41122158 |
gaatcttgcacgcatatccgactcaaagataattgatttcattgcttcatcttttagatgttcatcatcaatattctttagcatcttcaccatgttggaa |
41122059 |
T |
|
| Q |
201 |
acaccaaacaaacgatgagccttgt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41122058 |
acaccaaacaaacgatgagccttgt |
41122034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 325009 - 325123
Alignment:
| Q |
103 |
atcttgcacgcatatccgactcaaaaataattgatttcattgcttcatcttttagatgttcatcatcaatagtctttagcatcttcaccatgttggaaac |
202 |
Q |
| |
|
||||||||||||| || |||||||||||||| || ||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
325009 |
atcttgcacgcatttctgactcaaaaataatcgacttcattgcttcatctttatgatgatcatcatcaatagactttagcgtcttcaccatgttggaaat |
325108 |
T |
|
| Q |
203 |
accaaacaaacgatg |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
325109 |
accaaacaaacgatg |
325123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 3080569 - 3080694
Alignment:
| Q |
27 |
tgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagggaatcttgcacgcatatccgactcaa |
126 |
Q |
| |
|
||||||||||| | | |||||| |||| ||| ||| | ||||||||||||||||| ||||||||| | ||||| ||||||| || | |||||||| |
|
|
| T |
3080569 |
tgatctaactctttagaagacttatttatcatacctgcatacatatgaataacaccaagacatccatgaattgggaaatttgcacgaattttcgactcaa |
3080668 |
T |
|
| Q |
127 |
aaataattgatttcattgcttcatct |
152 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3080669 |
caataattgatttcattgcttcatct |
3080694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 3093939 - 3094017
Alignment:
| Q |
74 |
aataacaccgagacatccagtagcagggaatcttgcacgcatatccgactcaaaaataattgatttcattgcttcatct |
152 |
Q |
| |
|
||||||| | ||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
3093939 |
aataacatcaagacatccaccaacagggaattgagcacgcatatccgactcaataataattgatttcattgcatcatct |
3094017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 3104488 - 3104347
Alignment:
| Q |
71 |
atgaataacaccgagacatccagtagcagggaatcttgcacgcatatccgactcaaaaataattgatttcattgcttcatcttttagatgttcatcatca |
170 |
Q |
| |
|
|||||||||||| | ||||||| | | |||||| |||||| ||||||||||||||||||||||| | |||||| || || ||| || | || | | |
|
|
| T |
3104488 |
atgaataacaccaacacatccatgaacggggaattctgcacgaatatccgactcaaaaataattgaatccattgcatcggctcttacatcgttgtcttta |
3104389 |
T |
|
| Q |
171 |
atagtctttagcatcttcaccatgttggaaacaccaaacaaa |
212 |
Q |
| |
|
||| ||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
3104388 |
atattctttagtaacttcactatgttggaaacaccaaacaaa |
3104347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36915317 - 36915098
Alignment:
| Q |
1 |
tacaataagctagtagatttcttacatgatctaactcatcaacagacttctttaacatgcctccgtacatatgaataacaccgagacatccagtagcagg |
100 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| || | ||||| ||||||||| ||||| || ||||||||| ||||||||| | | || |
|
|
| T |
36915317 |
tacaataagctagtaacgtttttacatgatctaactcttccatagactgctttaacatacctccataatccataataacaccaagacatccatgaacggg |
36915218 |
T |
|
| Q |
101 |
gaatcttgcacgcatatccgactcaaaaataattgatttcattgcttcatcttttagatgttcatcatcaatagtctttagcatcttcaccatgttggaa |
200 |
Q |
| |
|
||| ||||||| ||||||||||||| ||| || ||| |||| || |||||||| ||| ||||| | ||| ||||| ||| | ||||||||| |
|
|
| T |
36915217 |
aaattttgcacgaatatccgactcaataattatggatctcatcgcaacatctttttgatcatcatccttgatatcttttagtatcctttgtatgttggaa |
36915118 |
T |
|
| Q |
201 |
acaccaaacaaacgatgagc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36915117 |
acaccaaacaaacgatgagc |
36915098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University