View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_116 (Length: 235)
Name: NF17063_low_116
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_116 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5422407 - 5422630
Alignment:
| Q |
1 |
aatagtggagccttcatttaaccacaaagaaattccctatatatgaaaaaaaatcaaatcaatatcttcataggcttccagacaacattagattnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
5422407 |
aatagtggagccttcatttaaccacaaagaaattccctaaatatgaaaaaaaatcaaactaatatcttcataggctttaagacaacattagattaaaaaa |
5422506 |
T |
|
| Q |
101 |
nnnnnnnnnnn--tcttaccttgcgactatatgcgtcaacaactaaaaacttcgatgtggtccaatttatttcggaatttaactctggtttctcattgaa |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5422507 |
aaaaaaaaaaaaatcttaccttgcgactatatgcttcaacaactaaaaacttcgatgtagtccaatttatttcggaatttaactctggtttctcattgaa |
5422606 |
T |
|
| Q |
199 |
agcataaagatgaatatcattatt |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
5422607 |
agcataaagatgaatatcattatt |
5422630 |
T |
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