View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_120 (Length: 229)
Name: NF17063_low_120
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 2095035 - 2095173
Alignment:
| Q |
19 |
ggaagctccttaagactataatatagtgaaattcttctcatcattccttataattatcatatgtgattatttatatgctaaagacacaataattctaacg |
118 |
Q |
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| T |
2095035 |
ggaagctccttaagactataatatagtgaaattcttctcatcattccttataattatcatatgtgattatttatatgctaaagacacaataattctaatg |
2095134 |
T |
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| Q |
119 |
catatacgtatgattgttcttgtagcatcatatatatat |
157 |
Q |
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| T |
2095135 |
catatacgtatgattgttcttgtagcatcatatatatat |
2095173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 2095228 - 2095280
Alignment:
| Q |
148 |
atatatatattcatatacatcaatcaaacacctaaaaatgcctctagtgtaat |
200 |
Q |
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| T |
2095228 |
atatatatatacatatacatcaatcaaacacctaaaaatgcctctagtgtaat |
2095280 |
T |
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