View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_124 (Length: 218)
Name: NF17063_low_124
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_124 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 49539801 - 49539607
Alignment:
| Q |
5 |
aaaaaattaaaagaatgtgtttaaattaaacggaaggtagaaaaacccttatttgtgaactttgtagatttagagaaacttaccctaaaactttaagttt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49539801 |
aaaaaattaaaagaatgtgtttaaattaaaccgaaggtagaaaaacccttatttgtgaactttgtagatttagagaaacttaccctaaaactttaagttt |
49539702 |
T |
|
| Q |
105 |
tgaatgagagttcatttaccatatcttatcttatttctaaatgctcctaacctatgtccgtgtctattgtctaagatcaagcaacatatgttaac |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49539701 |
tgaatgagagttcaagtaccatatcttatcttatttctaaatgctcctaacgtatgtccgtgtctattgtctaagatcaagcaacatatgttaac |
49539607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 18342181 - 18342229
Alignment:
| Q |
49 |
acccttatttgtgaactttgtagatttagagaaacttaccctaaaactt |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
18342181 |
acccttctttgtgaactttgtagatttagaaaaacttatcgtaaaactt |
18342229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 35444500 - 35444573
Alignment:
| Q |
24 |
tttaaattaaacggaaggtagaaaaacccttatttgtgaactttgtagatttagagaaacttaccctaaaactt |
97 |
Q |
| |
|
|||||||||||| | || ||| | ||||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35444500 |
tttaaattaaaccaagggcagatacacccttacttgtgaactttgtagatttagagaaacttatccaaaaactt |
35444573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 1723323 - 1723368
Alignment:
| Q |
40 |
ggtagaaaaacccttatttgtgaactttgtagatttagagaaactt |
85 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1723323 |
ggtagatacacccttatttgtgaactttgtagatttagaaaaactt |
1723368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 1724089 - 1724028
Alignment:
| Q |
23 |
gtttaaattaaacggaaggtagaaaaacccttatttgtgaactttgtagatttagagaaact |
84 |
Q |
| |
|
|||||||||||| | |||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1724089 |
gtttaaattaaaacaagggtagacacacccttatttatgaactttgtagatttagagaaact |
1724028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 9730726 - 9730771
Alignment:
| Q |
51 |
ccttatttgtgaactttgtagatttagagaaacttaccctaaaact |
96 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
9730726 |
ccttgtttgtgaactttgtagatttagagaaatttatcctaaaact |
9730771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University