View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_126 (Length: 217)
Name: NF17063_low_126
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_126 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 6348129 - 6348001
Alignment:
| Q |
67 |
tgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaatagta |
166 |
Q |
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| T |
6348129 |
tgataatattttaagaaaatgtaatcatatgtgtcggtgttgtcgcatgtcagacatcagacccattaatatgaagtgtcaatctttaaattgaatggta |
6348030 |
T |
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| Q |
167 |
tgtagcattgacgcatacatagacaacat |
195 |
Q |
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| T |
6348029 |
tgtagcattgacgcatacatagacaacat |
6348001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 6325910 - 6325783
Alignment:
| Q |
63 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
162 |
Q |
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| T |
6325910 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6325816 |
T |
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| Q |
163 |
agtatgtagcattgacgcatacatagacaacat |
195 |
Q |
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| T |
6325815 |
ggtatgtagcattgatacatacatagacaacat |
6325783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 6332866 - 6332739
Alignment:
| Q |
63 |
acactgataatattttaagaaaatataatcatatgtgttggtgtcgtcgtatatcaaacatcagacccattgatatgaagtgtctatctttagattgaat |
162 |
Q |
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| T |
6332866 |
acactgataatattttaagaaaatgtaatcatatgtgttggtgtcgtcgcatgccggacatc-----cattaatatgaagtgtcaatctttagattgaat |
6332772 |
T |
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| Q |
163 |
agtatgtagcattgacgcatacatagacaacat |
195 |
Q |
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| T |
6332771 |
ggtatgtagcattgatacatacatagacaacat |
6332739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 6348201 - 6348153
Alignment:
| Q |
52 |
aaataacatttacactgataatattttaagaaaatataatcatatgtgt |
100 |
Q |
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| T |
6348201 |
aaataatatttacactgataatattttaagaaaatgtaatcatatgtgt |
6348153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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