View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_127 (Length: 217)

Name: NF17063_low_127
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_127
NF17063_low_127
[»] chr7 (1 HSPs)
chr7 (1-200)||(29622593-29622792)
[»] chr5 (7 HSPs)
chr5 (5-200)||(35371133-35371328)
chr5 (2-154)||(35367494-35367646)
chr5 (1-200)||(35411287-35411486)
chr5 (5-133)||(35377086-35377214)
chr5 (5-164)||(35426045-35426204)
chr5 (1-200)||(35386641-35386840)
chr5 (2-186)||(35755473-35755657)
[»] chr1 (2 HSPs)
chr1 (2-169)||(10419956-10420123)
chr1 (5-200)||(10415039-10415234)
[»] chr8 (3 HSPs)
chr8 (1-182)||(15294359-15294540)
chr8 (1-182)||(15474728-15474909)
chr8 (26-164)||(13564902-13565040)
[»] chr3 (1 HSPs)
chr3 (1-191)||(1154303-1154493)
[»] chr2 (5 HSPs)
chr2 (1-198)||(30626671-30626868)
chr2 (105-198)||(30663701-30663794)
chr2 (105-198)||(30672381-30672474)
chr2 (1-62)||(30663624-30663685)
chr2 (1-62)||(30672304-30672365)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 29622792 - 29622593
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29622792 ctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgttttgtgagaatttaagcctacacaaattctgtaagatg 29622693  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622692 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattgtt 29622593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 35371133 - 35371328
Alignment:
Q  5 agctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatgaaga 104  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||| |||||  ||||||| || ||||| |    
T  35371133 agctttgggattcttctgttagagatgctcaccggaaagagaccaacagataacatgttttctgagagtctaagtctgcatgaattctgcaaaatgaaaa 35371232  T
Q  105 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattgtt 200  Q
    ||||||||||||| ||||||||||| ||||| | ||| ||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  35371233 ttccagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgatacagggattgtggaaaacaagattaggaattgtt 35371328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 35367494 - 35367646
Alignment:
Q  2 tacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatga 101  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||| |||||||||||||||||||    
T  35367494 tacagctttgggattctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcgagaatcttagccttcacaaattctgtaagatga 35367593  T
Q  102 agattccagaaggaattcttgagatagtggattcccgtttacttataccattt 154  Q
    | ||||| | || ||||||||||||||||||||| | ||| ||||| ||||||    
T  35367594 aaattcccgtagaaattcttgagatagtggattcacatttgcttatgccattt 35367646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 35411287 - 35411486
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    |||||||||||| ||||||||  |||||||| |||||| ||||||||||||| ||||||  |||| ||||| | |||| || ||  ||||||| || |||    
T  35411287 ctacagctttgggattcttctactagagatgttcactgcaaagagaccaacaaataacaacttttctgagagtctaagtctacatgaattctgcaaaatg 35411386  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattgtt 200  Q
    || ||| |||||||||| ||||||||||| ||||| | ||| ||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  35411387 aaaatttcagaaggaatccttgagatagtagattcacatttgcttttaccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgtt 35411486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 35377086 - 35377214
Alignment:
Q  5 agctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatgaaga 104  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| | |||||||| ||||||||||| |    
T  35377086 agctatggaattcttctgttagagatgcttactggaaagagaccaacagataacatcttttgtgagaatctaagcttacacaaattttgtaagatgaaaa 35377185  T
Q  105 ttccagaaggaattcttgagatagtggat 133  Q
    ||||||||||||||||||| |||||||||    
T  35377186 ttccagaaggaattcttgatatagtggat 35377214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 35426045 - 35426204
Alignment:
Q  5 agctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatgaaga 104  Q
    |||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||  |    
T  35426045 agctatggaattgttctgttagagatgcttactggaaagagaccaacagataacatgttttatgagaatttaagtttacacaaattctgtaagatgagaa 35426144  T
Q  105 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatc 164  Q
    |||| ||||||||||||||  ||||||||||  | || |||||  |||||||||||||||    
T  35426145 ttcctgaaggaattcttgatgtagtggattcatgcttgcttatgtcatttgctgaagatc 35426204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 35386641 - 35386840
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    |||||||||||| ||||||||  |||||||| |||| ||||||||||||||| ||||||  |||| |||||  ||||| ||||| |||||||| || ||     
T  35386641 ctacagctttgggattcttctactagagatgttcaccggaaagagaccaacaaataacaacttttctgagagattaagtctgcataaattctgcaaaata 35386740  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattgtt 200  Q
    || |||||||||| ||| ||||||||||| ||||| |  || ||| | |||||||||||||||  ||  |||||||||||||||||||||||||||||||    
T  35386741 aaaattccagaagcaatccttgagatagtagattctcaattgctttttccatttgctgaagatgagatggggattgtggaaaacaagattaggaattgtt 35386840  T

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Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 35755473 - 35755657
Alignment:
Q  2 tacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatga 101  Q
    ||||||| ||| ||||| ||||| || ||||| || |||||||||||||||||||||||||||| ||||||| |||  || |||||||||||||||||||    
T  35755473 tacagctatgggattctgctgttggaaatgcttaccggaaagagaccaacagataacatgttttatgagaatctaactctacacaaattctgtaagatga 35755572  T
Q  102 agattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaa 186  Q
      ||||| |||| |||||||||| | || ||||||||||  ||||| ||||| | |||||||| |||| |  |||||||||||||    
T  35755573 gaattcctgaagaaattcttgaggttgtagattcccgttgccttattccattggttgaagatcagacacgagttgtggaaaacaa 35755657  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 10420123 - 10419956
Alignment:
Q  2 tacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatga 101  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||| |  ||||| | ||||| |||||||||||||||||||    
T  10420123 tacagctttgggattctcttgttagagatgctcactggaaagagaccaacagataacatgtttagccagaatcttagccttcacaaattctgtaagatga 10420024  T
Q  102 agattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggaca 169  Q
    | ||||| | || ||||||||||||||||||||| | ||| ||||| |||||| || |||||| ||||    
T  10420023 aaattcctgtagaaattcttgagatagtggattcacatttgcttatgccatttcctaaagatcagaca 10419956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 10415234 - 10415039
Alignment:
Q  5 agctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatgaaga 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |  ||| || ||  ||||||| || ||||| |    
T  10415234 agctttgggattcttctgttagagatgctcactggaaagagaccaacaaataacatgttttctgagagtcaaagtctacatgaattctgcaaaatgaaaa 10415135  T
Q  105 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattgtt 200  Q
    ||||||||||||| || |||||||| ||||| |  |||||| | |||||||| |||| |  ||| |||||||||||||| ||||||| ||| ||||    
T  10415134 ttccagaaggaatcctcgagatagtagattcacaattacttttgccatttgccgaagttgagacggggattgtggaaaataagattaagaagtgtt 10415039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15294359 - 15294540
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    |||||||| ||| ||||| ||||| || |||||||| ||||||||||||||| ||| |||||| ||||||||| |||| || || ||||| |||||||||    
T  15294359 ctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgtaagatg 15294458  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaa 182  Q
    || |||||||||||||||||||||||||||| ||| | ||  ||||| ||||| | |||||||| ||||  | |||||||||    
T  15294459 aaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaa 15294540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15474728 - 15474909
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    |||||||| ||| ||||| ||||| || |||||||| ||||||||||||||| ||| |||||| ||||||||| |||| || || ||||| |||||||||    
T  15474728 ctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttgtaagatg 15474827  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaa 182  Q
    || |||||||||||||||||||||||||||| ||| | ||  ||||| ||||| | |||||||| ||||  | |||||||||    
T  15474828 aaaattccagaaggaattcttgagatagtgggttctcattggcttattccattggttgaagatcagacaaaggttgtggaaa 15474909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 13564902 - 13565040
Alignment:
Q  26 gagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatgaagattccagaaggaattcttgaga 125  Q
    ||||||||||| |||||||||||||| |||| ||||||||  ||   | |||  || ||||| | |||||||||||| |||||||||||||| |||| ||    
T  13564902 gagatgctcaccggaaagagaccaacggatatcatgttttccgacggtctaaatctacacaattactgtaagatgaaaattccagaaggaatccttgcga 13565001  T
Q  126 tagtggattcccgtttacttataccatttgctgaagatc 164  Q
    ||||||||   ||||| ||||| |||||| | |||||||    
T  13565002 tagtggatcaacgtttgcttatgccatttacggaagatc 13565040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 1154303 - 1154493
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||  || ||||||||||||||||||||  || | || ||||| |||    
T  1154303 ctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctatacgagttttgtaaaatg 1154402  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagatta 191  Q
    || ||| | |||||||| ||||||||||| ||    ||||| ||||| || ||||  ||||||| |||||  |||||||||||||||||||    
T  1154403 aaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtcgaagatcagacagaaattgtggaaaacaagatta 1154493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30626671 - 30626868
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgttttgtgagaatttaagcctgcacaaattctgtaagatg 100  Q
    ||||||||  || |||||||| ||||| |||||||||||||| ||||||||| ||| |||||||| ||  | | | || || ||   |||||||||||||    
T  30626671 ctacagctacgggattcttctcttagaaatgctcactggaaaaagaccaacaaatagcatgttttctggaagtctcagtctacatgcattctgtaagatg 30626770  T
Q  101 aagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattg 198  Q
    ||  ||||||| |||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30626771 aaagttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattg 30626868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 30663701 - 30663794
Alignment:
Q  105 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattg 198  Q
    ||||||| |||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30663701 ttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattg 30663794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 30672381 - 30672474
Alignment:
Q  105 ttccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcggacagggattgtggaaaacaagattaggaattg 198  Q
    ||||||| |||||  |||||||||| ||||| | ||| ||| | |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  30672381 ttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattg 30672474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30663624 - 30663685
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgt 62  Q
    ||||||||  || |||||||| ||||| |||||||||||||||||||||||| ||| |||||    
T  30663624 ctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgt 30663685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30672304 - 30672365
Alignment:
Q  1 ctacagctttggcattcttctgttagagatgctcactggaaagagaccaacagataacatgt 62  Q
    ||||||||  || |||||||| ||||| |||||||||||||||||||||||| ||| |||||    
T  30672304 ctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatagcatgt 30672365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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