View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_129 (Length: 214)
Name: NF17063_low_129
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_129 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 47706838 - 47706758
Alignment:
| Q |
120 |
ctaataagtaaagttgtaggatgaaaggttcttgtttgtcttttagaaattctgaaagttttttgtctggtttaagtgttg |
200 |
Q |
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| T |
47706838 |
ctaataagtaaagttctaggatgaaaggttcttgtttgtcttttagaaattctgaaagttttttctctggtttaagtgttg |
47706758 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47706957 - 47706895
Alignment:
| Q |
1 |
taaaagtttaaaaaatggaaagagaggttttctctttttgttgaagaagcaagaacttgcagg |
63 |
Q |
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| T |
47706957 |
taaaactttcaaaaatggaaagagaggttttctctttttgttgaagaagcaagaacttgcagg |
47706895 |
T |
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