View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_133 (Length: 203)
Name: NF17063_low_133
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_133 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 51844126 - 51843957
Alignment:
| Q |
15 |
aaaggcaactcgttaaacaaattgagaagggtgcgattgtggacatattattagtcctaattctatgttgatacaattttcattcaattggatgagttca |
114 |
Q |
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| T |
51844126 |
aaaggcaactcgttaaacaaattgagaagggtgcgattgtggacatattattagtcctaattctatgttgatacaattttcattcaattggatgagttca |
51844027 |
T |
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| Q |
115 |
agaataaacaaacctccaattggctgaactataagaattaactttaaatatccaaaatttgagagcgtgc |
184 |
Q |
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| T |
51844026 |
agaataaacaaacctccaattggctgaactataagaattaactttaaatatccaaaatttgagagcgtgc |
51843957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 51844957 - 51845001
Alignment:
| Q |
89 |
aattttcattcaattggatgagttcaagaataaacaaacctccaa |
133 |
Q |
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| T |
51844957 |
aattttcatgcaattggttgagttcaagagtaaataaacctccaa |
51845001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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