View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_15 (Length: 588)
Name: NF17063_low_15
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 417 - 553
Target Start/End: Original strand, 46351611 - 46351747
Alignment:
| Q |
417 |
gcatattactttaactttgtttagatcattcattcattcactttcaatcagtcaacttgttgtaaaatacgattgtaatgtgtggcctagcataaacttc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46351611 |
gcatattactttaactttgtttagatcattcattcattcactttcaatcagtcaacttgttgtaaaatacgattgtaatgtgtggcctagcataaacttc |
46351710 |
T |
|
| Q |
517 |
ttttactctaattaagattaaaattgtgatgatgata |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46351711 |
ttttactctaattaagattaaaattgtgatgatgata |
46351747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 46351210 - 46351356
Alignment:
| Q |
13 |
aatatagaatgaaaattattatgtagctttcaaatcgacatttcatttttattttgatatgaaataaatatttgaaacttatcttaagcatcttagtctc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46351210 |
aatatagaatgaaaattattatgtagctttgaaatcgacatttcatttttattttgatatgaaataaatatttgaaacttatcttaagcatcttagtccc |
46351309 |
T |
|
| Q |
113 |
taactttgagagagatacctttcaaccgatgttgaggtttagctttata |
161 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46351310 |
taacttt--gagagatacctttcaaccgatgttgaggtttagctttata |
46351356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 46351401 - 46351522
Alignment:
| Q |
206 |
aaacaatttcagttaaaaggcacaaaatgaaaatctatgatatgtcatatgcatctaagttttctca--ttttttgtttaaaatcccctgcaccattata |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46351401 |
aaacaatttcagttaaaaggcacaaaatgaaaatctatgatatgtcatatgcatctaagttttctcattttttttgtttaaaatcccctgcaccattata |
46351500 |
T |
|
| Q |
304 |
atcaactcaacttcgtagttgt |
325 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46351501 |
atcaactcaacttcgtagttgt |
46351522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University