View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_16 (Length: 561)
Name: NF17063_low_16
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 11353799 - 11354122
Alignment:
| Q |
12 |
atgaaacatcaagaaaattaagggtgcacaaggtgagtgagtggactaagctgtggggactataaattctgcaaaaatgcaagttgtttgtttcaaggtt |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11353799 |
atgaaacatcacgaaaattaagggtgcacaaggcgagtgagtggactaatctgtggggactataaattctgcaaaaatgcaagttgtttgtttcaaggtt |
11353898 |
T |
|
| Q |
112 |
ggcttgggtgtctgccccaacatgagaaagattgcattataaaggtgtcccatgacctcttgtctgccagaaatcgagctcacatggaggctgtttggga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11353899 |
ggcttgggtgtctgccccaacatgagaaagattgtattataaaggtgtcccatgacctcttgtctgccagaaatcgagctcacatggaggctgtttggga |
11353998 |
T |
|
| Q |
212 |
gaaagctagatgcaatacagaagttgatctggcaataagttttgtgcaatgtgcacactgcagttacatgtttgttcagtttgctgaaaaataactgtca |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| |||| ||| |||||| |||| ||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
11353999 |
gaaagctggatgcaatacagaagttgatctggcaatgagtgttgt----tgtagacactgtagttgcatgtctgttcagcttgctgaaaaagaactgtca |
11354094 |
T |
|
| Q |
312 |
aggcaaaaagaggtgatgttgatggttt |
339 |
Q |
| |
|
||| ||||||| |||| ||||||||||| |
|
|
| T |
11354095 |
agggaaaaagaagtgacgttgatggttt |
11354122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 441 - 543
Target Start/End: Original strand, 11354121 - 11354223
Alignment:
| Q |
441 |
ttcatgtgcgcgctcgaaatcattctcacagggaagcaattaactaatgtatgccaaatgcaatgttgatgcgaaaattaatactaattgttagagggtt |
540 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||| |||||||| |
|
|
| T |
11354121 |
ttcatgtgcacgctcgaaatcattctcacagggaagcaattaactaatgtatgccaaatgcaatgctgacgcaaaaattaataccgattgtcagagggtt |
11354220 |
T |
|
| Q |
541 |
tat |
543 |
Q |
| |
|
||| |
|
|
| T |
11354221 |
tat |
11354223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University