View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17063_low_17 (Length: 554)
Name: NF17063_low_17
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 10239391 - 10239941
Alignment:
| Q |
1 |
cataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239391 |
cataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgacc |
10239490 |
T |
|
| Q |
101 |
agttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239491 |
agttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcg |
10239590 |
T |
|
| Q |
201 |
ttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239591 |
ttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaaga |
10239690 |
T |
|
| Q |
301 |
gatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10239691 |
gatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattg |
10239790 |
T |
|
| Q |
401 |
tgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgata |
500 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10239791 |
tgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatg |
10239890 |
T |
|
| Q |
501 |
atgtcatcgagtgtgttgagtattagtgctgatattgatgatgtttgtagt |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10239891 |
atgtcatcgagtgtgttgagtattagtgctgagattgatgatgtttgtagt |
10239941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 10230611 - 10231164
Alignment:
| Q |
1 |
cataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
10230611 |
cataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatccaatgccgttagatgggttatactgacc |
10230710 |
T |
|
| Q |
101 |
agttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcg |
200 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||| | |
|
|
| T |
10230711 |
ggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttg |
10230810 |
T |
|
| Q |
201 |
ttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaaga |
300 |
Q |
| |
|
||||| |||||||| || ||||||| || ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10230811 |
ttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaaga |
10230910 |
T |
|
| Q |
301 |
gatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattg |
400 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||| |||| | ||||| |
|
|
| T |
10230911 |
gatggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgattacacattg |
10231010 |
T |
|
| Q |
401 |
tgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgata |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10231011 |
tgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgata |
10231110 |
T |
|
| Q |
501 |
atgtcatcgagtgtgttgagtattagtgctgatattgatgatgtttgtagtctt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231111 |
atgtcatcgagtgtgttgagtattagtgctgatattgatgatgtttgtagtctt |
10231164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 10255214 - 10254667
Alignment:
| Q |
1 |
cataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgttaattggattatactgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||||||||| ||||| || || || |
|
|
| T |
10255214 |
cataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgttagaaggattgtattgtcc |
10255115 |
T |
|
| Q |
101 |
agttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcg |
200 |
Q |
| |
|
|| || ||||||||| | | || || |||||||| || || | |||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
10255114 |
agatatgacacgtgctgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcg |
10255015 |
T |
|
| Q |
201 |
ttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaaga |
300 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||| |||| ||| || ||||||||||| |||||||| |||| |
|
|
| T |
10255014 |
ttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaaga |
10254915 |
T |
|
| Q |
301 |
gatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattg |
400 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10254914 |
ggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgactttgcattg |
10254815 |
T |
|
| Q |
401 |
tgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaagatgttgata |
500 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10254814 |
tgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaaggtgttgatg |
10254715 |
T |
|
| Q |
501 |
atgtcatcgagtgtgttgagtattagtgctgatattgatgatgtttgt |
548 |
Q |
| |
|
||||| |||| |||||||| || |||||||| | ||| ||||||||| |
|
|
| T |
10254714 |
atgtcgtcgaatgtgttgaatagtagtgctgggagtgacgatgtttgt |
10254667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University