View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_18 (Length: 545)
Name: NF17063_low_18
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 10119140 - 10119682
Alignment:
| Q |
1 |
tacagatttttcattgattgatcattatttttatccaatggtgttctctaagctttgcatattttaagcatgaaaattgttgttcggttgaaattggatt |
100 |
Q |
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| T |
10119140 |
tacagatttttcattgattgatcgttatttttctccaatggtgttctctaagctttgcatattttaagcatgaaaattgttgttcggttgaaattggatt |
10119239 |
T |
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| Q |
101 |
tccggaactacttgatttggttgaaattgttgaccctccccagttacatcgattgataatacttgctttttgttttgtttaatttgtggggaaacaatct |
200 |
Q |
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| T |
10119240 |
tccggaactacttgatttggttgaaattgttgaccctcctcagctacatcgattgataatacttgctttttgttttgtttaatttgtggggaaacaatct |
10119339 |
T |
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| Q |
201 |
cttcgcaattattcttagaaatcttacaaagaacttaattatccaattgcatttgcattttacatgcataagaaatcttaaaactattgttgatatatgt |
300 |
Q |
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| T |
10119340 |
cttcgcaattattcttagaaatcttacaaagaactcaattatccaattgcatttgcattttacatgcataagaaatcttaaaactattgttgatatatgt |
10119439 |
T |
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| Q |
301 |
aactaaacatcgaaatgttacgaaactttgtatatacatgcaatataagtgttttagcataagt----------------ctcaaaattcaatttttcgt |
384 |
Q |
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| T |
10119440 |
aactaaacatcgaaatgttacgaaactttgtatatacatgtaatataagtgttttagcataagtcttcgcaaaaactaagctcaaaattcaaattttcgt |
10119539 |
T |
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| Q |
385 |
atatacactattatttttgcgatttcgcacattttgataaataaatagaaaatcaagacaaaggcgtgattgcttttattaaataatggtgttaaatata |
484 |
Q |
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| T |
10119540 |
atatacactattatttttgcgattttgcacattttgataaatgaatagaaaatcaagacaaaggcgtgattggttttattaaataatggcgttaaatata |
10119639 |
T |
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| Q |
485 |
tggttcctgtttagggtaggctctgaaaaatgtggtgccatat |
527 |
Q |
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| T |
10119640 |
tggttcctgtttagggtaggctctgaaaaatgtggtgccatat |
10119682 |
T |
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