View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_19 (Length: 542)

Name: NF17063_low_19
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_19
NF17063_low_19
[»] scaffold0891 (2 HSPs)
scaffold0891 (22-520)||(3688-4185)
scaffold0891 (133-205)||(3614-3687)
[»] chr3 (9 HSPs)
chr3 (33-210)||(35774298-35774482)
chr3 (76-209)||(35848122-35848262)
chr3 (97-220)||(35865814-35865944)
chr3 (433-513)||(35848097-35848177)
chr3 (427-513)||(35774310-35774396)
chr3 (249-325)||(40950878-40950954)
chr3 (298-338)||(35220689-35220729)
chr3 (434-513)||(35865769-35865848)
chr3 (132-220)||(35754280-35754369)
[»] scaffold1335 (2 HSPs)
scaffold1335 (76-209)||(1-141)
scaffold1335 (433-513)||(86-166)
[»] scaffold2086 (2 HSPs)
scaffold2086 (132-210)||(472-551)
scaffold2086 (446-513)||(558-625)
[»] scaffold1996 (2 HSPs)
scaffold1996 (132-210)||(472-551)
scaffold1996 (446-513)||(558-625)
[»] chr2 (2 HSPs)
chr2 (249-322)||(40930673-40930746)
chr2 (228-296)||(38360850-38360918)
[»] chr4 (1 HSPs)
chr4 (325-364)||(39818662-39818701)
[»] scaffold0654 (1 HSPs)
scaffold0654 (300-338)||(3618-3656)
[»] chr5 (2 HSPs)
chr5 (316-362)||(29453220-29453266)
chr5 (287-347)||(118773-118833)


Alignment Details
Target: scaffold0891 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 22 - 520
Target Start/End: Complemental strand, 4185 - 3688
Alignment:
Q  22 atacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4185 atacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatccc-tc 4087  T
Q  122 aaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctcttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4086 aaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctcttt 3987  T
Q  222 cctctgataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatttgtcatt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3986 cctctgataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattctggttctcccaaacgatttgtcatt 3887  T
Q  322 tggtgaagcttattaactatttgagttcaactgtttggttaaagtagacaggtaatagaatataagtattacaactaaaccaaaatataattcatattag 421  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3886 tggtgaagcttattaactatttgagttcaactgtttggtcaaagtagataggtaatagaatataagtattacaactaaaccaaaatataattcatattag 3787  T
Q  422 actaatatttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3786 actaatatttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtagtgtatgc 3688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 3687 - 3614
Alignment:
Q  133 agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaa 205  Q
    ||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||| || |||||||||||| ||||    
T  3687 agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccattacaa 3614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 35774298 - 35774482
Alignment:
Q  33 atactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatgatcccctcaaattag---- 128  Q
    |||||| |||||||||||| | |||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||| | ||||||||        
T  35774298 atactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtagc 35774397  T
Q  129 --ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct 210  Q
      ||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| ||  |||||||||    
T  35774398 ttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaacaagttct 35774482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
Q  76 aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat 168  Q
    |||||||||||| ||||| ||||||||||||||||||||||| | |||||||||      | ||||||||||||||||| |||| | |||| |||||| |    
T  35848122 aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt 35848221  T
Q  169 tcttcttccttttctccttccatcatttccatcacaagttc 209  Q
    |||| | | ||||||||||||||||||||||||||||||||    
T  35848222 tcttttcctttttctccttccatcatttccatcacaagttc 35848262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 35865814 - 35865944
Alignment:
Q  97 gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc 189  Q
    ||||||| ||||||||||||| | |||||||||      | ||||||||||||||||| |||| | |||| |||||| ||||| | | ||||||||||||    
T  35865814 gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc 35865913  T
Q  190 atcatttccatcacaagttctcttagctctt 220  Q
    ||||||||||||||||||||||||| |||||    
T  35865914 atcatttccatcacaagttctcttatctctt 35865944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 35848097 - 35848177
Alignment:
Q  433 gaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 513  Q
    |||||||||| || || ||||||||||| ||| | || |||||||| ||||||||||||||  |||||||||||| |||||    
T  35848097 gaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtag 35848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 513
Target Start/End: Original strand, 35774310 - 35774396
Alignment:
Q  427 tatttggaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 513  Q
    ||||||| ||||||||||| || ||||||||||| ||| | || ||||| || ||||||||||||||  |||| ||||||| |||||    
T  35774310 tatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgatgatccacccaaattagtag 35774396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 40950878 - 40950954
Alignment:
Q  249 agataagtatagttttaccaacaattgttccatccaagaattgaattctga-ttctcccaaacgatttgtcatttggt 325  Q
    |||||| |||||| | ||||||||||||| ||||||| ||||||||| ||| ||||  ||||||||||||||||||||    
T  40950878 agataaatatagtctgaccaacaattgtttcatccaaaaattgaatt-tgagttctttcaaacgatttgtcatttggt 40950954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 35220689 - 35220729
Alignment:
Q  298 gattctcccaaacgatttgtcatttggtgaagcttattaac 338  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  35220689 gattatcccaaacgattcgtcatttggtgaagcttattaac 35220729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 35865769 - 35865848
Alignment:
Q  434 aactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 513  Q
    ||||||||||||||| ||||||||||  ||| |||| || ||||  |||||| |||||||  |||||||||||| |||||    
T  35865769 aactcaaatagcattgtgatgaagaagctctttaattaaattatagaaattaatgtatgatgatcctcccaaattagtag 35865848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 35754280 - 35754369
Alignment:
Q  132 tagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctt 220  Q
    ||||||||||||||||||| | || |||| || ||| || || | |||||||||||| |||||||||||  ||||||||| ||| |||||    
T  35754280 tagctttcttcttccactctatgctcttttgtttcatttgttttcccttttctcctttcatcatttccagtacaagttctgttatctctt 35754369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 141 - 1
Alignment:
Q  76 aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat 168  Q
    |||||||||||| ||||| ||||||||||||||||||||||| | |||||||||      | ||||||||||||||||| |||| | |||| |||||| |    
T  141 aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt 42  T
Q  169 tcttcttccttttctccttccatcatttccatcacaagttc 209  Q
    |||| | | ||||||||||||||||||||||||||||||||    
T  41 tcttttcctttttctccttccatcatttccatcacaagttc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 166 - 86
Alignment:
Q  433 gaactcaaatagcattttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 513  Q
    |||||||||| || || ||||||||||| ||| | || |||||||| ||||||||||||||  |||||||||||| |||||    
T  166 gaactcaaatggccttgtgatgaagaacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtag 86  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2086 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold2086
Description:

Target: scaffold2086; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 551 - 472
Alignment:
Q  132 tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct 210  Q
    |||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| ||||    
T  551 tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2086; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 625 - 558
Alignment:
Q  446 attttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 513  Q
    ||||| ||||||||| ||| | |  |||||||||||||||||||| ||  ||||||||||||||||||    
T  625 attttcatgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtag 558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1996 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold1996
Description:

Target: scaffold1996; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 551 - 472
Alignment:
Q  132 tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct 210  Q
    |||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| ||||    
T  551 tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1996; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 625 - 558
Alignment:
Q  446 attttgatgaagaacatctctaatcaacttatgaaaattattgtatgaatatcctcccaaatcagtag 513  Q
    ||||| ||||||||| ||| | |  |||||||||||||||||||| ||  ||||||||||||||||||    
T  625 attttcatgaagaacctctttgactaacttatgaaaattattgtaggacaatcctcccaaatcagtag 558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 322
Target Start/End: Complemental strand, 40930746 - 40930673
Alignment:
Q  249 agataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatttgtcattt 322  Q
    ||||||||||||||| || || ||||||| |||||||||||  ||||| ||||||| ||||||||| |||||||    
T  40930746 agataagtatagtttgacaaataattgtttcatccaagaatcaaattcggattctctcaaacgattcgtcattt 40930673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 38360918 - 38360850
Alignment:
Q  228 ataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattc 296  Q
    ||||||||||||||| ||||||| |||||||||||   |||| |||| ||||||| |||||||||||||    
T  38360918 ataatctagagtttgattgtgaggtaagtatagttggtccaagaattattccatctaagaattgaattc 38360850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 364
Target Start/End: Original strand, 39818662 - 39818701
Alignment:
Q  325 tgaagcttattaactatttgagttcaactgtttggttaaa 364  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  39818662 tgaagcttattaactatttgagttcaattgcttggttaaa 39818701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 3618 - 3656
Alignment:
Q  300 ttctcccaaacgatttgtcatttggtgaagcttattaac 338  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  3618 ttctcccaaacgatttgtcatttggtaaagctcattaac 3656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 29453266 - 29453220
Alignment:
Q  316 gtcatttggtgaagcttattaactatttgagttcaactgtttggtta 362  Q
    |||||||||||||| | |||||||||||||| |||| ||||||||||    
T  29453266 gtcatttggtgaagttcattaactatttgagctcaattgtttggtta 29453220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 118833 - 118773
Alignment:
Q  287 aattgaattctgattctcccaaacgatttgtcatttggtgaagcttattaactatttgagt 347  Q
    |||||||||| |||||||||||||||| |||  ||||||| ||||  ||||| ||||||||    
T  118833 aattgaattcagattctcccaaacgatatgttctttggtggagctcgttaaccatttgagt 118773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University