View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_20 (Length: 521)

Name: NF17063_low_20
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_20
NF17063_low_20
[»] chr5 (1 HSPs)
chr5 (48-505)||(26595825-26596285)
[»] chr6 (2 HSPs)
chr6 (20-55)||(22714042-22714077)
chr6 (21-54)||(33319271-33319304)
[»] chr3 (2 HSPs)
chr3 (17-55)||(26707561-26707599)
chr3 (17-53)||(27604509-27604545)
[»] chr1 (1 HSPs)
chr1 (25-55)||(4631402-4631432)
[»] chr2 (2 HSPs)
chr2 (24-53)||(160778-160807)
chr2 (23-51)||(5771547-5771575)
[»] chr4 (1 HSPs)
chr4 (23-55)||(3267856-3267888)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 48 - 505
Target Start/End: Original strand, 26595825 - 26596285
Alignment:
Q  48 ttctttccagcttccatcataactcactagttgtccaacaatagttaagccaaacttatagcacaaacatatgtcatctgattagcttcacaaacaatgt 147  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26595825 ttctttccaacttccatcagaactcactagttgtccaacaatagttaagccaaacttatagcacaaacatatgtcatctgattagcttcacaaacaatgt 26595924  T
Q  148 gagtcaccgaagagtgctctaattgatgaagaactccatgaatttgagaaatatacaattattatttgcatatcatcattttatgacactannnnnnnct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  26595925 gagtcaccgaagagtgctctaattgatgaagaactccatgaatttgagaaatatacaattattatttgcatatcatcattttatgacactatggattttt 26596024  T
Q  248 t---aggggttaggattacttcttgtcacaataatcacataaatactttctatccnnnnnnnnnnnnncagttgtttgcaaaataagttatcatttattt 344  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  26596025 ttttaggggttaggattacttcttgtcacaataatcacataaatactttctatccaaaaaataaaaaacagttgtttgcaaaataagttatcatttattt 26596124  T
Q  345 tgtagttggcctttcccatagtataattctgggtccatccttgaaagattagacgttgaaagcatttgcacatgtggatcaattcctttaattgctttac 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26596125 tgtagttggcctttcccatagtataattctgggtccatccttgaaagattagacgttgaaagcatttgcacatgtggatcaattcctttaattgctttac 26596224  T
Q  445 cctcgtggtctctacacaaacataaggccaaaccttattgcccttaatctcatgactcatt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26596225 cctcgtggtctctacacaaacataaggccaaaccttattgcccttaatctcacgactcatt 26596285  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 22714042 - 22714077
Alignment:
Q  20 gacatttttcaattcataccaacactagttctttcc 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  22714042 gacatttttcaattcataccaacactagttctttcc 22714077  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 33319271 - 33319304
Alignment:
Q  21 acatttttcaattcataccaacactagttctttc 54  Q
    ||||||||||||| ||||||||||||||||||||    
T  33319271 acatttttcaatttataccaacactagttctttc 33319304  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 26707561 - 26707599
Alignment:
Q  17 tgggacatttttcaattcataccaacactagttctttcc 55  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  26707561 tgggacatttttcaattgataccaacactagttctttcc 26707599  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 27604545 - 27604509
Alignment:
Q  17 tgggacatttttcaattcataccaacactagttcttt 53  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27604545 tgggacatttttcaattcataccaacactaattcttt 27604509  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 4631432 - 4631402
Alignment:
Q  25 ttttcaattcataccaacactagttctttcc 55  Q
    |||||||||||||||||||||||||||||||    
T  4631432 ttttcaattcataccaacactagttctttcc 4631402  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 160778 - 160807
Alignment:
Q  24 tttttcaattcataccaacactagttcttt 53  Q
    ||||||||||||||||||||||||||||||    
T  160778 tttttcaattcataccaacactagttcttt 160807  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 5771547 - 5771575
Alignment:
Q  23 atttttcaattcataccaacactagttct 51  Q
    |||||||||||||||||||||||||||||    
T  5771547 atttttcaattcataccaacactagttct 5771575  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 3267856 - 3267888
Alignment:
Q  23 atttttcaattcataccaacactagttctttcc 55  Q
    |||||||||||||| ||||||||||||||||||    
T  3267856 atttttcaattcatgccaacactagttctttcc 3267888  T

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