View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_23 (Length: 495)
Name: NF17063_low_23
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 24985332 - 24985600
Alignment:
| Q |
1 |
caatggtgagtgtggtgagtgtaagtgttgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatgga |
100 |
Q |
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| T |
24985332 |
caatggtgagtgtggtgagtgtaagtgctgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatgga |
24985431 |
T |
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| Q |
101 |
acaagtagattttcttcaatagatggcaaacccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattcagcttgtgctgtta |
200 |
Q |
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| T |
24985432 |
acaagtagattttcttcaatagatggcaaacccatttttcatttcttgaatacttcaactttcactgagtatacagtggtggattcagcttgtgctgtta |
24985531 |
T |
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| Q |
201 |
agctcaacactgaagataaccttagtctcaaaaaactcactttgcttagttgtggagtttccacaggta |
269 |
Q |
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| T |
24985532 |
agctcaacactgaagataaccttagtctcaaaaaactcaccttgcttagttgtggagtttccacaggta |
24985600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 24993258 - 24993531
Alignment:
| Q |
8 |
gagtgtggtgagtgtaagtgttgcatgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagta |
107 |
Q |
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| T |
24993258 |
gagtgtggtgagtgtaactactgcaagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagactaatgtgtgatggtacaagta |
24993357 |
T |
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| Q |
108 |
gattttcttcaatagatggcaaacccatttttcatttcttgaacacttcaactttcactgagtatacagtggtggattcagcttgtgctgttaagctcaa |
207 |
Q |
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| T |
24993358 |
gattctctacaatagatggcaaactcatttaccatttcttgaactcttcaactttcacggagtacacagtggtcgattcaggttgtgctcttaagctcaa |
24993457 |
T |
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| Q |
208 |
cactgaagataaccttagtctcaaaaaactcactttgcttagttgtggagtttccacaggtaagttactctctc |
281 |
Q |
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| T |
24993458 |
cactgaagacattcttagtctcaaaaaactcaccttgcttagttgtggagtttccacaggtaagttactctctc |
24993531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 340 - 483
Target Start/End: Original strand, 24993590 - 24993733
Alignment:
| Q |
340 |
caaaactaaaataaatgcaggaattggagctgcttggaataatgctaatgtgcatgctggttcatctgttgcaatctttggtttaggtgcaatagggctc |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
24993590 |
caaaactaaaataaatgcaggaattggagctgcttggaataatgctaatgtgcatgctggttcttctgtagcaatctttggtttaggtgcaatagggctc |
24993689 |
T |
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| Q |
440 |
gctgtaagattcctcattttctggtgccatataatgtagatatt |
483 |
Q |
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| T |
24993690 |
gctgtaagattcctcattttctggtgccatataatgtagatatt |
24993733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 462
Target Start/End: Original strand, 24989393 - 24989513
Alignment:
| Q |
342 |
aaactaaaataaatgcaggaattggagctgcttggaataatgctaatgtgcatgctggttcatctgttgcaatctttggtttaggtgcaatagggctcgc |
441 |
Q |
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||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| |
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| T |
24989393 |
aaactcaaataaatgtaggaataggagctgcttggaataatgctaatgtgcatgctggttcatctgtagcaatctttggtttaggtgcagttggcctcgc |
24989492 |
T |
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| Q |
442 |
tgtaagattcctcattttctg |
462 |
Q |
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|||||| || ||||||||||| |
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| T |
24989493 |
tgtaagttttctcattttctg |
24989513 |
T |
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