View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_24 (Length: 490)

Name: NF17063_low_24
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_24
NF17063_low_24
[»] chr5 (3 HSPs)
chr5 (22-320)||(18557051-18557366)
chr5 (383-469)||(18557429-18557515)
chr5 (383-463)||(35846986-35847069)
[»] chr8 (7 HSPs)
chr8 (109-320)||(544595-544820)
chr8 (171-303)||(40530914-40531046)
chr8 (383-435)||(544481-544533)
chr8 (109-179)||(23426932-23427002)
chr8 (383-466)||(40531126-40531209)
chr8 (171-218)||(31180414-31180461)
chr8 (127-170)||(31180480-31180523)
[»] chr3 (8 HSPs)
chr3 (176-313)||(18973084-18973221)
chr3 (110-179)||(2786886-2786955)
chr3 (109-171)||(55129436-55129498)
chr3 (383-463)||(2782178-2782261)
chr3 (405-469)||(45181506-45181572)
chr3 (185-219)||(55129530-55129564)
chr3 (135-179)||(3968960-3969005)
chr3 (396-436)||(18983168-18983208)
[»] chr1 (2 HSPs)
chr1 (184-320)||(38564596-38564732)
chr1 (110-171)||(38564504-38564565)
[»] chr6 (3 HSPs)
chr6 (22-95)||(24494868-24494941)
chr6 (179-267)||(12128584-12128672)
chr6 (383-469)||(12129110-12129196)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-102)||(86326-86406)
[»] chr7 (5 HSPs)
chr7 (387-466)||(35206799-35206878)
chr7 (109-170)||(24931568-24931629)
chr7 (110-167)||(26231738-26231795)
chr7 (265-313)||(27993797-27993845)
chr7 (185-221)||(46262467-46262503)
[»] chr2 (4 HSPs)
chr2 (185-313)||(9561049-9561178)
chr2 (182-268)||(42048639-42048725)
chr2 (109-170)||(9561211-9561272)
chr2 (416-469)||(44888422-44888475)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 18557051 - 18557366
Alignment:
Q  22 acagtagatggtaggaatagtgggtaaactaacatgaagttcagagagaagtgatgacaatcagagaacttctgtggatgctagaactttttggttacag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  18557051 acagtagatggtaggaatagtgggtaaactaacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgctagaactttttggttacag 18557150  T
Q  122 ttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcg-----------------gcgtcgtcctttaggtctgtaaagggtcgtg 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  18557151 ttccgtctttctggtcgtccaagcttttgtgtgctttcccaacctcccctcgtcgtcggtctttggtcggcgtcgtcctttaggtctgtaaagggtcgtg 18557250  T
Q  205 cagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggtgcttaaaaggtgttcgg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18557251 cagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggcgcttaaaaggtgttcgg 18557350  T
Q  305 ggcggtgctattggtg 320  Q
    ||||||||||||||||    
T  18557351 ggcggtgctattggtg 18557366  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 383 - 469
Target Start/End: Original strand, 18557429 - 18557515
Alignment:
Q  383 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtg 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18557429 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtg 18557515  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 463
Target Start/End: Original strand, 35846986 - 35847069
Alignment:
Q  383 ccaccttttctttgtcttcg-agtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgg 463  Q
    |||||||||||||||||| | | |||||||| ||| |||||||||| | |||||  || || |||||||||||| |||||||||    
T  35846986 ccaccttttctttgtctttggattttggcatcgggttattggtgggtcaagtttttggacatgttaaggtgtctgctctggtgg 35847069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 109 - 320
Target Start/End: Complemental strand, 544820 - 544595
Alignment:
Q  109 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcg-----------------gcgtcgtcctttaggtct 191  Q
    ||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||                 ||||||||||||||||||    
T  544820 tttttggttattgttccttctttctggtcgtccaagcttctttgtgctttcccaacctctcctcgtcgtcggtctttggttggcgtcgtcctttaggtct 544721  T
Q  192 gtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagagggtggtgctt 291  Q
     |||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  544720 ataaagggtcgtgcagttgtggtggatc---tctctggatgatttgagatttttctcctctgcgaagaaagacggtatagtggtccagagggtggcgctg 544624  T
Q  292 aaaaggtgttcggggcggtgctattggtg 320  Q
    | ||||||||| |||||||||||||||||    
T  544623 ataaggtgttcagggcggtgctattggtg 544595  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 40530914 - 40531046
Alignment:
Q  171 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtata 270  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||| |    
T  40530914 tcggcggcgtcctttaggtctgcaaagggtcgtgcagttgtggtggatccagtccctggatgatttgagatttttctccttcgcgaagaaagacggtaca 40531013  T
Q  271 gtggtccagagggtggtgcttaaaaggtgttcg 303  Q
     |||||||||||||||  || ||||||||||||    
T  40531014 ttggtccagagggtggcactgaaaaggtgttcg 40531046  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 544533 - 544481
Alignment:
Q  383 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  544533 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagttt 544481  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 23426932 - 23427002
Alignment:
Q  109 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcggcgtcg 179  Q
    ||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  23426932 tttttggttattgttccttctttctggtcgtccaagcttctgtgcgctttcccaacctctcctcgtcgtcg 23427002  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 40531126 - 40531209
Alignment:
Q  383 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtc 466  Q
    ||||||||||| |||||| ||||||| |||| |||||| ||| | | |||||||| ||||||||||||||| ||||||||||||    
T  40531126 ccaccttttctctgtctttgagtttgacattaggatatcggtagactgagtttggacaggttaaggtgtctgctctggtgggtc 40531209  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 31180461 - 31180414
Alignment:
Q  171 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggat 218  Q
    |||||| ||| ||| ||||||| |||||||||||||||||||||||||    
T  31180461 tcggcggcgttcttaaggtctgcaaagggtcgtgcagttgtggtggat 31180414  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 31180523 - 31180480
Alignment:
Q  127 tctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 170  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||    
T  31180523 tctttatggtcgtccaagcttctgtgcgctttccaaacctcccc 31180480  T

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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 18973084 - 18973221
Alignment:
Q  176 gtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggt 275  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| | ||||    
T  18973084 gtcgtcctttaggtttgcaaagggtcgtgcagttgtggtggatccagtctttggatgatttgagatttttctcctccgcgaagaaagacggtacattggt 18973183  T
Q  276 ccagagggtggtgcttaaaaggtgttcggggcggtgct 313  Q
       | |||||| | | || |||||||||||||||||||    
T  18973184 gatgtgggtggcgttgaataggtgttcggggcggtgct 18973221  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 2786955 - 2786886
Alignment:
Q  110 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcggcgtcg 179  Q
    |||||||||| ||||| | | ||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  2786955 ttttggttactgttccttttatctggccgtccaagcttctgtgcgctttcccaacctcccctcgtcgtcg 2786886  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 55129436 - 55129498
Alignment:
Q  109 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccct 171  Q
    ||||||||||| ||||| ||||  | ||||||||||||||| || ||||||||||||||||||    
T  55129436 tttttggttactgttccttcttcttagtcgtccaagcttctatgcgctttcccaacctcccct 55129498  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 2782261 - 2782178
Alignment:
Q  383 ccaccttttctttgtctt-cgagtttggcattgggatattggtgggccgagttt--gggcaggttaaggtgtctactctggtgg 463  Q
    |||||||||||||| ||| ||| ||||||||   |||| |||||||||||||||  || ||||||||||||||| |||||||||    
T  2782261 ccaccttttctttggcttacgaatttggcatctagataatggtgggccgagtttttggacaggttaaggtgtctgctctggtgg 2782178  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 45181506 - 45181572
Alignment:
Q  405 tttggcattgggatattggtgggccgag--tttgggcaggttaaggtgtctactctggtgggtcgtg 469  Q
    |||||||||||| |||||||||| ||||  ||||| ||||||| ||||||| ||||||||| |||||    
T  45181506 tttggcattgggttattggtgggtcgagtttttggacaggttagggtgtctgctctggtggttcgtg 45181572  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 55129530 - 55129564
Alignment:
Q  185 taggtctgtaaagggtcgtgcagttgtggtggatc 219  Q
    |||||||| ||||||||||||||||||||||||||    
T  55129530 taggtctgcaaagggtcgtgcagttgtggtggatc 55129564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 3969005 - 3968960
Alignment:
Q  135 gtcgtccaagcttctgtgtgctttcccaacctc-ccctcggcgtcg 179  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||    
T  3969005 gtcgtccaagcttctgtgcgctttcccaacctctccctcgtcgtcg 3968960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 18983168 - 18983208
Alignment:
Q  396 gtcttcgagtttggcattgggatattggtgggccgagtttg 436  Q
    |||||||| |||||||| |||||| ||||||||||||||||    
T  18983168 gtcttcgaatttggcatcgggataatggtgggccgagtttg 18983208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 38564596 - 38564732
Alignment:
Q  184 ttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagtggtccagaggg 283  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||| ||  | | |||| |||||    
T  38564596 ttaggtctgcaaagggtcgtgcagttgtggtggatccagtctctggatgatttgagatttttctcctccacgaagatagacagttcaatagtccggaggg 38564695  T
Q  284 tggtgcttaaaaggtgttcggggcggtgctattggtg 320  Q
    ||| | | |||||||||| ||||||||||| ||||||    
T  38564696 tggcgttgaaaaggtgtttggggcggtgcttttggtg 38564732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 38564504 - 38564565
Alignment:
Q  110 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccct 171  Q
    |||||||||| ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  38564504 ttttggttactgttccttctttatggtcgtacaagcttctgtgcgctttcccaacctcccct 38564565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 24494941 - 24494868
Alignment:
Q  22 acagtagatggtaggaatagtgggtaaactaacatgaagttcagagagaagtgatgacaatcagagaacttctg 95  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  24494941 acagtagatggtaggaatagtgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctg 24494868  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 12128584 - 12128672
Alignment:
Q  179 gtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggt 267  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||  | |||||||||||    
T  12128584 gtcctttaggtctgtaaagggccgtgcagttgtggtggatccagtctctggatgatttaagatttttctcttccatgtagaaagacggt 12128672  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 469
Target Start/End: Original strand, 12129110 - 12129196
Alignment:
Q  383 ccaccttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtg 469  Q
    |||||||||||  |||||||| |||||||| |||||| ||||||||||||||||| || ||| |||||||| |||||||||||||||    
T  12129110 ccaccttttctccgtcttcgaatttggcatcgggataatggtgggccgagtttggacaagtttaggtgtcttctctggtgggtcgtg 12129196  T

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Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 86406 - 86326
Alignment:
Q  22 acagtagatggtaggaatagtgggtaaactaacatgaagttcagagagaagtgatgacaatcagagaacttctgtggatgc 102  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  86406 acagtagatggtaggaatagttggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc 86326  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 35206878 - 35206799
Alignment:
Q  387 cttttctttgtcttcgagtttggcattgggatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtc 466  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||    
T  35206878 cttttctctgtctttgagtttggcattgggatattggtgggccgaatttggacaagttaaggtgtctgctctggtgggtc 35206799  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 24931568 - 24931629
Alignment:
Q  109 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 170  Q
    ||||||||||| ||||  |||| || |||||||||||||||||| |||||||||||||||||    
T  24931568 tttttggttactgttctttcttcctagtcgtccaagcttctgtgcgctttcccaacctcccc 24931629  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 26231738 - 26231795
Alignment:
Q  110 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctc 167  Q
    |||||||||  ||||| ||||||||| |||||||||| ||| | ||||||||||||||    
T  26231738 ttttggttattgttccttctttctgggcgtccaagctgctgcgcgctttcccaacctc 26231795  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 27993845 - 27993797
Alignment:
Q  265 ggtatagtggtccagagggtggtgcttaaaaggtgttcggggcggtgct 313  Q
    |||| ||||||||||||||||||||| ||  |||||||| |||||||||    
T  27993845 ggtacagtggtccagagggtggtgctgaatcggtgttcgtggcggtgct 27993797  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 46262503 - 46262467
Alignment:
Q  185 taggtctgtaaagggtcgtgcagttgtggtggatcca 221  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  46262503 taggtctgcaaagggtcgtgcaattgtggtggatcca 46262467  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 9561178 - 9561049
Alignment:
Q  185 taggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtatagt--ggtccagagg 282  Q
    |||||||| |||||||||||||||||||||||||||  |  || ||||  | |||  ||||||||||||||| | ||||||||| |||  ||||||||||    
T  9561178 taggtctgcaaagggtcgtgcagttgtggtggatcctgtacctggatgggtggag-gttttctcctccgcgacgtaagacggtacagtggggtccagagg 9561080  T
Q  283 gtggtgcttaaaaggtgttcggggcggtgct 313  Q
    |||| ||| ||| | |||||| |||||||||    
T  9561079 gtggcgctaaaacgatgttcgtggcggtgct 9561049  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 42048725 - 42048639
Alignment:
Q  182 ctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggta 268  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||| |||| || | | ||| |||||| ||||| |||||| ||||    
T  42048725 ctttaggtctgcaaagggtcttgcagttgtggtggatccagtctctggatggttggtggtttatctccttcgcgatgaaagatggta 42048639  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 9561272 - 9561211
Alignment:
Q  109 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 170  Q
    ||||||||||  ||||| |||| || |||||||||||||||||| |||||||||||||||||    
T  9561272 tttttggttattgttccttcttccttgtcgtccaagcttctgtgcgctttcccaacctcccc 9561211  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 44888475 - 44888422
Alignment:
Q  416 gatattggtgggccgagtttgggcaggttaaggtgtctactctggtgggtcgtg 469  Q
    |||||||||||||||||||||| |||||| | |||||| |||||||||||||||    
T  44888475 gatattggtgggccgagtttggacaggtttacgtgtctgctctggtgggtcgtg 44888422  T

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