View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_25 (Length: 489)
Name: NF17063_low_25
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 39476646 - 39476194
Alignment:
| Q |
18 |
ataacctcacgaacactgaaaacacaaacttttgtttgtttgtttgagggaaacactaaaaacacaaacttattggccttcacactctgcaatttcttgt |
117 |
Q |
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| T |
39476646 |
ataaactcacaaacactaaaaacacaaactttttttttttt---tgagggaaacactaaaaacacaaacttattggccttcacactctacaatttcttgt |
39476550 |
T |
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| Q |
118 |
tctagtattttccttgagtgcatcttagtcaaaatttgtacgttaaatttgtaaatttgtttatcaaacagtttttatattannnnnnnnatcgtgatcg |
217 |
Q |
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| T |
39476549 |
tctagtattttccttgagtgcatcttagtcaaaatttgtacgttaaatttgtaaatttgtttatcaaacaatttttatatt-ttttttttatcgtgatcg |
39476451 |
T |
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| Q |
218 |
tttgattttcttctatttttgtatacctatcaatcaactgtatggtggagagccatatataagatctgccaaagacactgcattccatgtcactcttttc |
317 |
Q |
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| T |
39476450 |
tttgattttcttctatttttgtatagctatcaatcaactgtatggtggagagccatatataagatctgccaaagacactgcattccatgtcactcttttc |
39476351 |
T |
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| Q |
318 |
attgcaagaaaaaatggaagctatgtcaactattttatgacatcaatagtaaccgatcaagccattcaaaaaatatatatagttaccaatttatatagct |
417 |
Q |
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| T |
39476350 |
attgcaagaaaaaatgaaagctatgtcaactattttatgacatcaatagtaaccgatcaagccattcaaaaaatatatatagttaccaatttatatagct |
39476251 |
T |
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| Q |
418 |
aattttttcacttaccgtgaaaacagaacaaatattgttgcttgggaggtagttgct |
474 |
Q |
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| T |
39476250 |
aattttttcacttaccgtgaaaacagaacaaatattgttgcttgggaggtagttgct |
39476194 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 44358240 - 44358155
Alignment:
| Q |
261 |
ggtggagagccatatataagatctgccaaagacactgcattccatgtcactcttttcattgcaagaaaaaatggaagctatgtcaacta |
349 |
Q |
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| T |
44358240 |
ggtggagtgccatatatacgctctgctgaagacattgcatttcatgtcactctttttgttgcaag---aaatggaagctttgtcaacta |
44358155 |
T |
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