View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_27 (Length: 475)
Name: NF17063_low_27
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 26613200 - 26613651
Alignment:
| Q |
19 |
aaaaacatataaatattcttaaaatgtctcataattatggactaaagtgnnnnnnnnnnnnnaaatagcttcgtgactaaaattttattttaaggtgaat |
118 |
Q |
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| T |
26613200 |
aaaaacaaataaatattcttaaaatgtctcataattatggactaaagtgtttttttttttttaaatagtttagtgactaaaattttatttttaggtgaat |
26613299 |
T |
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| Q |
119 |
aagtgaggaatttaatgtctctatcaaccagaaataagtgtannnnnnnn--atttgtatgtaagaaaccaattattatgtagaagtaggagaacattac |
216 |
Q |
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| T |
26613300 |
aagtgaggaatttaatatctctgtcaaccagaaataagtgtatttcttttttatttctatgcaagaaaccaattattatgtagaagtaggagaacattac |
26613399 |
T |
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| Q |
217 |
aatttgcagcagcagaacaagtataattgaattgaaaaagagcataagaatattctaattcatattccttcatgaaactttaccatgcctaaaatgaaaa |
316 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26613400 |
aatttaaagcggcagaacaagtataattgaattgaaaaagagcataagaatattctaattcatattccttcatgaaactttaccatgcctaaaatgaaaa |
26613499 |
T |
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| Q |
317 |
agaatatgctatagcatttagcatatgcctcctaaatccattgtaacacatacaactgcacccataatatccactagttttcttttgttgcaacttttgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26613500 |
agaatatgctatagcatttagcatatgcctcctaaatcaactgtaacacatacaactgcacccataatatccactagttttcttttgttgcaacttttgt |
26613599 |
T |
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| Q |
417 |
ttgtgaaacagagaatattgtgtgaaacccatcaccatttctctttcatttc |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26613600 |
ttgtgaaacagagaatattgtgtgaaacccatcaccatttctctttcatttc |
26613651 |
T |
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