View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_29 (Length: 462)
Name: NF17063_low_29
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 53676343 - 53676596
Alignment:
| Q |
1 |
ccaattttaaagtttatcttttaacattttatttattttctcttcactgcgtgtttcttagcttctacaaagagggttaagtgtgacaaacaatatttta |
100 |
Q |
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| T |
53676343 |
ccaattttaaagtttatcttttaacattttatttattttctcttgactgcgtgtttcttagcttctacaaagaggtttaagtgtcacaaacaatatttta |
53676442 |
T |
|
| Q |
101 |
aaactaagttatttgattcattgagtctctctgatataaagtttacaaattacaagtgatatttacagacaaatgtgtttgagcctaaatcctattagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676443 |
aaactaagttatttgattcattgagtctctctgatatatagtttacaaattacaagtgatatttacagacaaatgtgtttgagcctaaatcctattagcc |
53676542 |
T |
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| Q |
201 |
atgatcatgacctataaagatcgtgtcctaattgcttctattcggctaacctta |
254 |
Q |
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| T |
53676543 |
atgatcatgacatataaagatcgtgtcctaattgctattattcggctaacctta |
53676596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 255 - 462
Target Start/End: Original strand, 53676622 - 53676829
Alignment:
| Q |
255 |
gttattttttatagtgttggtctttatgtgtcttgttctattactcatttcaagcgcannnnnnnnnnnnnnnnnngataacgcttcctagattctagct |
354 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
53676622 |
gttattttgtatagtattggtctttatgtgtcttgttctattactcatttcaagcatattctctctctctctctttgataacgcttcctagattctagct |
53676721 |
T |
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| Q |
355 |
gtgtttgttattcgaaggcttgaaaacaagaagtagaatctttagactaaattatccacttacattgagaccctctccacataagaatgacgcgaataaa |
454 |
Q |
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| T |
53676722 |
gtgtttgttattcgaaggcttgaaaacaagaagtagattctttagattaaattatccacttacattgagcccctctccatataagaatgattcgactaaa |
53676821 |
T |
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| Q |
455 |
aaatcttc |
462 |
Q |
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| T |
53676822 |
caatcttc |
53676829 |
T |
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