View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_3 (Length: 859)

Name: NF17063_low_3
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_3
NF17063_low_3
[»] chr4 (17 HSPs)
chr4 (11-827)||(28948426-28949236)
chr4 (11-827)||(22990246-22991047)
chr4 (407-827)||(22714557-22714979)
chr4 (11-412)||(22703070-22703454)
chr4 (526-832)||(22696864-22697172)
chr4 (526-847)||(46956533-46956859)
chr4 (16-138)||(22698733-22698848)
chr4 (16-138)||(22981682-22981797)
chr4 (16-138)||(22995269-22995384)
chr4 (59-142)||(56560508-56560591)
chr4 (773-847)||(28949216-28949290)
chr4 (59-142)||(24036214-24036297)
chr4 (773-847)||(22714959-22715033)
chr4 (773-847)||(22990192-22990266)
chr4 (58-142)||(16565539-16565623)
chr4 (58-142)||(15618844-15618928)
chr4 (63-108)||(52056997-52057042)
[»] scaffold0009 (2 HSPs)
scaffold0009 (11-827)||(200042-200862)
scaffold0009 (773-847)||(200842-200916)
[»] chr7 (4 HSPs)
chr7 (443-847)||(20087585-20087992)
chr7 (57-142)||(37638703-37638788)
chr7 (57-142)||(10372714-10372799)
chr7 (58-103)||(12963342-12963387)
[»] chr8 (7 HSPs)
chr8 (526-832)||(19646298-19646606)
chr8 (16-138)||(19648194-19648309)
chr8 (59-142)||(193387-193470)
chr8 (59-142)||(720991-721074)
chr8 (59-142)||(882098-882181)
chr8 (59-142)||(30983223-30983306)
chr8 (59-142)||(44240122-44240205)
[»] chr1 (8 HSPs)
chr1 (526-832)||(4344211-4344518)
chr1 (16-138)||(4345989-4346104)
chr1 (59-142)||(46407488-46407571)
chr1 (59-142)||(50978939-50979022)
chr1 (59-135)||(35606336-35606412)
chr1 (58-142)||(35569906-35569990)
chr1 (443-518)||(5928144-5928219)
chr1 (60-100)||(50979027-50979067)
[»] chr5 (6 HSPs)
chr5 (526-832)||(22808084-22808392)
chr5 (16-138)||(22809984-22810099)
chr5 (59-142)||(33232457-33232540)
chr5 (59-142)||(7072032-7072115)
chr5 (58-142)||(22481515-22481599)
chr5 (199-245)||(22808657-22808703)
[»] chr2 (7 HSPs)
chr2 (526-819)||(23362369-23362651)
chr2 (16-138)||(23360942-23361058)
chr2 (59-142)||(13895999-13896082)
chr2 (59-142)||(14036616-14036699)
chr2 (59-142)||(14380107-14380190)
chr2 (58-142)||(5916944-5917028)
chr2 (58-142)||(36311597-36311681)
[»] chr3 (4 HSPs)
chr3 (20-138)||(7011653-7011764)
chr3 (59-142)||(51125383-51125466)
chr3 (59-142)||(52692542-52692625)
chr3 (58-115)||(16246819-16246876)
[»] chr6 (4 HSPs)
chr6 (59-142)||(21515703-21515786)
chr6 (59-142)||(30019220-30019303)
chr6 (58-142)||(16547456-16547540)
chr6 (57-135)||(17830767-17830845)
[»] scaffold0394 (1 HSPs)
scaffold0394 (64-135)||(6607-6678)


Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 827
Target Start/End: Original strand, 28948426 - 28949236
Alignment:
Q  11 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  28948426 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcacctta 28948518  T
Q  111 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 210  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28948519 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtttgcaaac 28948618  T
Q  211 cgaaacaccagaaggaagaggcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttgg 310  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28948619 cgaaacaccagaaggaagaggcagtccagttaacataaaaaaat-cctagaaagtctagaaagcaattacagagacaaacaaaaccaaccaggcccttgg 28948717  T
Q  311 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 410  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28948718 ccaaaaaactacccccaaccgtagcaggttagcaggccaggaacagcagctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 28948817  T
Q  411 gtcacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaa 510  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  28948818 gtcacaaaaaacataagaaatcatggcattacaaatatagcttatatataactagttaaaactgaaatatagagtttaaggaggataagtgaacaacaaa 28948917  T
Q  511 tccgaagcnnnnnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactg 610  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |     
T  28948918 tccgaagcaaaaaaacaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttattt 28949017  T
Q  611 gtacttcataagagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttccta 710  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28949018 gtacttcataagagtacttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttccta 28949117  T
Q  711 gattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaatt 808  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  ||   | |||||||||||||||||    
T  28949118 gattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaatt 28949217  T
Q  809 catagtacttcctagctta 827  Q
    |||||||| ||||||||||    
T  28949218 catagtacatcctagctta 28949236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 11 - 827
Target Start/End: Complemental strand, 22991047 - 22990246
Alignment:
Q  11 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||    
T  22991047 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgggcacctta 22990955  T
Q  111 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 210  Q
     |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990954 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 22990855  T
Q  211 cgaaacaccagaaggaagaggcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttgg 310  Q
    ||||||||||||||||||||||||||||||||||||            | |||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  22990854 cgaaacaccagaaggaagaggcagtccagttaacataa----------aaaaagcctagaaagcaactacagagacaacaaaaaccaaccagacccttgg 22990765  T
Q  311 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22990764 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 22990665  T
Q  411 gtcacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaa 510  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22990664 gttacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaa 22990565  T
Q  511 tccgaagcnnnnnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactg 610  Q
    ||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22990564 tccgaagcaaaaaaacaaaataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactg 22990465  T
Q  611 gtacttcataagagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttccta 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990464 gtacttcataagagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttccta 22990365  T
Q  711 gattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttcttaat 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||  | ||||||||||||||||    
T  22990364 gattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttcttaat 22990266  T
Q  808 tcatagtacttcctagctta 827  Q
    ||||||||| ||||| ||||    
T  22990265 tcatagtacatcctatctta 22990246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 407 - 827
Target Start/End: Original strand, 22714557 - 22714979
Alignment:
Q  407 gaatgtcacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaa 506  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22714557 gaatgttacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaa 22714656  T
Q  507 caaatccgaagcnnnnnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagtt 606  Q
    ||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22714657 caaatccgaagcaaaaaaacaaaataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagtt 22714756  T
Q  607 actggtacttcataagagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtactt 706  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22714757 actggtacttcataagagtacttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtactt 22714856  T
Q  707 cctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttct 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  || ||  | ||||||||||||    
T  22714857 cctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttct 22714955  T
Q  804 taattcatagtacttcctagctta 827  Q
    ||||||||||||| ||||| ||||    
T  22714956 taattcatagtacatcctatctta 22714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 412
Target Start/End: Original strand, 22703070 - 22703454
Alignment:
Q  11 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22703070 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcacctta 22703162  T
Q  111 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 210  Q
     |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703163 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 22703262  T
Q  211 cgaaacaccagaaggaagaggcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttgg 310  Q
    ||||||||||||||||||||||||||||||||||||            | |||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  22703263 cgaaacaccagaaggaagaggcagtccagttaacataa----------aaaaagcctagaaagcaactacagagacaacaaaaaccaaccagacccttgg 22703352  T
Q  311 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22703353 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 22703452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 526 - 832
Target Start/End: Complemental strand, 22697172 - 22696864
Alignment:
Q  526 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 625  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22697172 caacataagtgaaccataaatacgagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt 22697073  T
Q  626 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 725  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  22697072 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcaaagttaccggtacttcctagattacttcttaatt 22696973  T
Q  726 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 823  Q
    |||||||||| || |||||||||||||||||||||||| || | |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  22696972 taaagacaacagagcattacaacattaaagactaaacaaaatagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 22696873  T
Q  824 cttacttcc 832  Q
     ||| ||||    
T  22696872 gttaattcc 22696864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 526 - 847
Target Start/End: Complemental strand, 46956859 - 46956533
Alignment:
Q  526 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 625  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| |||    
T  46956859 caacataagtgaacaaaaaatacaagcataattatcacacaacataagccttcattaaggtatagaaacattacataagttactagtacttcataatagt 46956760  T
Q  626 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 725  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  46956759 acttcatagttactagcacttcttagattacttcctaattaaaaggcaaaacataacagtacttgatagttactagtacttcctagattacttcttaatt 46956660  T
Q  726 taaagacaacggaacattacaacattaaagacta---aacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcc 820  Q
    |||||| || ||||||||||||||||||||||||   || |||||| | |||||||||   |  ||   | ||||||||||||||||||||||||||| |    
T  46956659 taaagataatggaacattacaacattaaagactaaataatataacagtgcttcatagttactagtacttcctagattacttcttaattcatagtactttc 46956560  T
Q  821 tagcttacttcctagtcacacaggttc 847  Q
    |||||||||||||||||||||||||||    
T  46956559 tagcttacttcctagtcacacaggttc 46956533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 22698848 - 22698733
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22698848 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22698756  T
Q  116 aagtgataataattaaatacctc 138  Q
     ||||||||||||| ||||||||    
T  22698755 gagtgataataattgaatacctc 22698733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 22981682 - 22981797
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22981682 tgtgtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22981774  T
Q  116 aagtgataataattaaatacctc 138  Q
     ||||||||||||| ||||||||    
T  22981775 gagtgataataattgaatacctc 22981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 22995269 - 22995384
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22995269 tgtgtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22995361  T
Q  116 aagtgataataattaaatacctc 138  Q
     ||||||||||||| ||||||||    
T  22995362 gagtgataataattgaatacctc 22995384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 56560591 - 56560508
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  56560591 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 56560508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 773 - 847
Target Start/End: Original strand, 28949216 - 28949290
Alignment:
Q  773 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 847  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  28949216 ttcatagtacatcctagcttagattgcttcttaactcatagtacttcctagcttacttcctagtcacataggttc 28949290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 24036214 - 24036297
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  24036214 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 24036297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 773 - 847
Target Start/End: Original strand, 22714959 - 22715033
Alignment:
Q  773 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 847  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  22714959 ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc 22715033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 773 - 847
Target Start/End: Complemental strand, 22990266 - 22990192
Alignment:
Q  773 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 847  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  22990266 ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc 22990192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 16565623 - 16565539
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| | ||| ||||||    
T  16565623 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgattacttcatta 16565539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 15618928 - 15618844
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||| | || |||| ||||||| ||||| ||||| ||||||    
T  15618928 aattgcaaatctattcttccataccccaaaagttttttcaattgtgcatcctaaacttgagtgatagtaattgaatacttcatta 15618844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 52056997 - 52057042
Alignment:
Q  63 caaatctattcttccatacaccaaaagttctttctattgtgcacct 108  Q
    ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  52056997 caaatctgttcttccataccctaaaagttatttctattgtgcacct 52057042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 11 - 827
Target Start/End: Original strand, 200042 - 200862
Alignment:
Q  11 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||    
T  200042 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgggcacctta 200134  T
Q  111 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 210  Q
     |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200135 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtctgcaaac 200234  T
Q  211 cgaaacaccagaaggaagaggcagtccagttaacatnnnnnnnngcctagaaagtctagaaagcaattacagagacaacaaaaaccaaccaggcccttgg 310  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  200235 cgaaacaccagaaggaagaggcagtccagttaacataaaaaaa-gcctagaaagtctagaaagcaactacagagacaacaaaaaccaaccagacccttgg 200333  T
Q  311 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  200334 ccaaaaaactacccccagccgtagcaggttagcaggccaggaacagcacctgaagctgcaaccaaaccagccgcaaaaccataagaaacatgctttgaat 200433  T
Q  411 gtcacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaa 510  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  200434 gttacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatatagtttatggaggataagtgaacaacaaa 200533  T
Q  511 tccgaagcnnnnnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactg 610  Q
    ||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  200534 tccgaagcaaaaaaacaaaataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactg 200633  T
Q  611 gtacttcataagagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataac----------agtacttcatagttacag 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||          ||||||||||||||||||    
T  200634 gtacttcataagagtacttcatagttactagcacttcttagattaattcctaattgaaaggaaaaacataacagtacttcatagtacttcatagttacag 200733  T
Q  701 gtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagatta 798  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |  ||   | |||||||    
T  200734 gtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagatta 200833  T
Q  799 cttcttaattcatagtacttcctagctta 827  Q
    |||||||||||||||||| ||||||||||    
T  200834 cttcttaattcatagtacatcctagctta 200862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 773 - 847
Target Start/End: Original strand, 200842 - 200916
Alignment:
Q  773 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc 847  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  200842 ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctaatcacagaggttc 200916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 443 - 847
Target Start/End: Complemental strand, 20087992 - 20087585
Alignment:
Q  443 aaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnnnnnn-caacataagtgaacca 541  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | | |||||||||||| ||||         ||||||||||||||||    
T  20087992 aaatagagcttatatataaccagttaaaactgaaatatagagcttatggaggacaggtgaacaacaaatctgaaggaaaaaaaacaacataagtgaacca 20087893  T
Q  542 aaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtacttcatagttactag 641  Q
    ||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  20087892 aaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataatagtacttcatagttactag 20087793  T
Q  642 cacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaagacaacggaaca 741  Q
     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||| |||||||||    
T  20087792 tacttcttagattacttcctaattaaaaggcaaaacataacagtacttcatagttactagtactttctagattacttcttaatttaaagataacggaaca 20087693  T
Q  742 ttacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctagcttacttcctagtcac 839  Q
    |||||||||||||||||||| |||||| |||||||||||   |  ||   | |||||||||||||||||||||  |||||||||||||||||||||||||    
T  20087692 ttacaacattaaagactaaatataacagtacttcatagttactagtacttcctagattacttcttaattcataagacttcctagcttacttcctagtcac 20087593  T
Q  840 acaggttc 847  Q
    ||| ||||    
T  20087592 acaagttc 20087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 37638788 - 37638703
Alignment:
Q  57 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  37638788 aaattgcaaatctattcttccatacaccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 37638703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 10372714 - 10372799
Alignment:
Q  57 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||  ||||| ||||||    
T  10372714 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaatcgaatacttcatta 10372799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 12963387 - 12963342
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtg 103  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  12963387 aattgcaaatctattcttccataccccaaaagttctttcaattgtg 12963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-114; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 526 - 832
Target Start/End: Complemental strand, 19646606 - 19646298
Alignment:
Q  526 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 625  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  19646606 caacataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaatattacataagttactggtacttcataagagt 19646507  T
Q  626 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 725  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  19646506 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttaccggtacttcctagattacttcttaatt 19646407  T
Q  726 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 823  Q
    |||||||||| |||||||||||||||||||| ||||||||| | |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  19646406 taaagacaacagaacattacaacattaaagattaaacataagagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 19646307  T
Q  824 cttacttcc 832  Q
    |||| ||||    
T  19646306 cttaattcc 19646298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 19648309 - 19648194
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19648309 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 19648217  T
Q  116 aagtgataataattaaatacctc 138  Q
     ||||||||||||| ||||||||    
T  19648216 gagtgataataattgaatacctc 19648194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 193470 - 193387
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  193470 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 721074 - 720991
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  721074 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 720991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 882181 - 882098
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  882181 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 30983223 - 30983306
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30983223 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30983306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 44240205 - 44240122
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||||||||| ||||||    
T  44240205 attgcaaatatgttcttccataccccaaaagttctttctattgtgtatcttaaacttgagtgataataattaaatacttcatta 44240122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 526 - 832
Target Start/End: Complemental strand, 4344518 - 4344211
Alignment:
Q  526 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 625  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  4344518 caacataagtgaacaaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt 4344419  T
Q  626 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 725  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  4344418 acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttactggtacttcctagattacttcttaatt 4344319  T
Q  726 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 823  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||   |  ||   | ||||||||||||||||||||||||||||||||    
T  4344318 taaagacaacgaaacatta-aacattaaagactaaacataacagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag 4344220  T
Q  824 cttacttcc 832  Q
    |||| ||||    
T  4344219 cttaattcc 4344211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 4346104 - 4345989
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4346104 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 4346012  T
Q  116 aagtgataataattaaatacctc 138  Q
     ||||||||||||| ||||||||    
T  4346011 gagtgataataattgaatacctc 4345989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 46407571 - 46407488
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  46407571 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 46407488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 50978939 - 50979022
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  50978939 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 50979022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 35606412 - 35606336
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 135  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  35606412 attgcaaatctgttcttccataccccaacagttctttctattgtgcaccttaaacttgagtgataataattaaatac 35606336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 35569906 - 35569990
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  35569906 aattgcaaatttattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 35569990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 5928219 - 5928144
Alignment:
Q  443 aaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagc 518  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||||| ||||||||| | |||||||||| |||||    
T  5928219 aaatagagcttatatagaaccacttaaaactgaaatatagagtttattgaggataagtgcacaacaaatctgaagc 5928144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 50979027 - 50979067
Alignment:
Q  60 ttgcaaatctattcttccatacaccaaaagttctttctatt 100  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  50979027 ttgcaaatctgttcttccataccccaaaagttctttctatt 50979067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 526 - 832
Target Start/End: Complemental strand, 22808392 - 22808084
Alignment:
Q  526 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||| ||||||||||||||| |||||||||||||||    
T  22808392 caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaaaattacataagttactagtacttcataagagt 22808293  T
Q  626 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 725  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  22808292 acttcatggttactaccacttcttagattacttcctaattgaaaagaaaaatataatagtacttcatagttactagtacttcctagattacttcttaatt 22808193  T
Q  726 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag 823  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||   | ||||||||||||||||| ||||||||||||||    
T  22808192 taaagataacggaacattacaacattaaagactaaacataacaatacttcatagttactagtacttcatagattacttcttaatttatagtacttcctag 22808093  T
Q  824 cttacttcc 832  Q
    |||| ||||    
T  22808092 cttaattcc 22808084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 22810099 - 22809984
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22810099 tgtgtcttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaactt 22810007  T
Q  116 aagtgataataattaaatacctc 138  Q
     ||||||||||||| ||||||||    
T  22810006 gagtgataataattgaatacctc 22809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 33232540 - 33232457
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  33232540 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 33232457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 7072032 - 7072115
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||| ||||||    
T  7072032 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaatttgagtgataataattaaatacttcatta 7072115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 22481599 - 22481515
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  22481599 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 22481515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 22808703 - 22808657
Alignment:
Q  199 atgtctgcaaaccgaaacaccagaaggaagaggcagtccagttaaca 245  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  22808703 atgtctgcagaccgaaacaccagaaggaagaggcagtccaattaaca 22808657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 526 - 819
Target Start/End: Original strand, 23362369 - 23362651
Alignment:
Q  526 caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||||||||||             |||    
T  23362369 caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaacattacataagttact-------------agt 23362455  T
Q  626 acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 725  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  23362456 acttcatggttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcatagttattagtacttcctagattacttcttaatt 23362555  T
Q  726 taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttc 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |  ||   | ||||||||||||||||||||||||||||    
T  23362556 taaagacaacggaacattacaacattaaagactaaacataacaatacttaatagttactagtacttcgtagattacttcttaattcatagtacttc 23362651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 23360942 - 23361058
Alignment:
Q  16 tgtgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaa-gttctttctattgtgcaccttacact 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||       |||||||| |||||||||||| |||||||||||||||||||||| |||    
T  23360942 tgtgtcttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattctttcatacaccaaaaagttctttctattgtgcaccttaaact 23361034  T
Q  115 taagtgataataattaaatacctc 138  Q
    | ||||||||||||| ||||||||    
T  23361035 tgagtgataataattgaatacctc 23361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 13896082 - 13895999
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  13896082 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 13895999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 14036699 - 14036616
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  14036699 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 14036616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 14380190 - 14380107
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  14380190 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 14380107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 5916944 - 5917028
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  5916944 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 5917028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 36311681 - 36311597
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  36311681 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 36311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 7011764 - 7011653
Alignment:
Q  20 tcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagt 119  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  7011764 tcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagt 7011672  T
Q  120 gataataattaaatacctc 138  Q
    |||||||||| ||||||||    
T  7011671 gataataattgaatacctc 7011653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 51125383 - 51125466
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  51125383 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 51125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 52692625 - 52692542
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  52692625 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 52692542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 16246819 - 16246876
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 115  Q
    |||||||||||||||||||||| |   |||||||||||| |||||||| |||| ||||    
T  16246819 aattgcaaatctattcttccatgccttaaaagttctttcaattgtgcatcttaaactt 16246876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 21515703 - 21515786
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  21515703 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 21515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 30019303 - 30019220
Alignment:
Q  59 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30019303 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30019220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 16547540 - 16547456
Alignment:
Q  58 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 142  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  16547540 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 16547456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 17830767 - 17830845
Alignment:
Q  57 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 135  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  17830767 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 17830845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 6607 - 6678
Alignment:
Q  64 aaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 135  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  6607 aaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 6678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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