View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_30 (Length: 459)
Name: NF17063_low_30
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_30 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 4246654 - 4246223
Alignment:
| Q |
16 |
atcaagaacttttt-ccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatag |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4246654 |
atcaagaacttttttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactctgtgtaactgactccaatatag |
4246555 |
T |
|
| Q |
115 |
cctttgtaaccttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggc |
214 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4246554 |
cctatgtaaccttcaagtcatcaaaatcatcagagacacaaacccatgcttgaacatcaaatttctgctgtatactg-catgattgtatacagattgggc |
4246456 |
T |
|
| Q |
215 |
taaagtggtttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatg |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4246455 |
taaagtgatttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtc---------------tatg |
4246371 |
T |
|
| Q |
315 |
gcaattttgtctcgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctcc---aagagaggttatcagttgcaaaatgtt |
411 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||| |
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| T |
4246370 |
gcaattttgtcttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtgatcagttgcaacatgtt |
4246271 |
T |
|
| Q |
412 |
gaagaccaagaatatctttgaatctgagaatgtattcaagcctagcaa |
459 |
Q |
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| T |
4246270 |
gaagactaagaatatctttgaatttgagaatgtattcaagcctagcaa |
4246223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 4314716 - 4315152
Alignment:
| Q |
19 |
aagaactt-tttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcct |
117 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||| |||||| |||||| | |||||||| | ||| | ||| | |||| || ||||| || |||| |
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| T |
4314716 |
aagaacttctttccagccagtttttccttcaaatctagatgaagcaactctatattatttatatgacatgcacttctagtaattgcctccatgattgcct |
4314815 |
T |
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| Q |
118 |
ttgtaaccttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaa |
217 |
Q |
| |
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|||||||||| | |||| |||| |||||| | ||| |||||||||||||||||||||| |||| |||| || |||| ||||| |||||||||||||| |
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| T |
4314816 |
ttgtaaccttgagttcattgaaatgatcagaaacacatgcccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaa |
4314915 |
T |
|
| Q |
218 |
agtggtttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggca |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
4314916 |
agtagtttttcccacaccacccatgccaactatggggatcacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggcc |
4315015 |
T |
|
| Q |
318 |
attttgtctcgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctccaaga---gaggttatcagttgcaaaatgttgaa |
414 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||| | |||||||| |||||||| |
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| T |
4315016 |
attttgtcttgatccctaccaaataagttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaa |
4315115 |
T |
|
| Q |
415 |
gaccaagaatatctttgaatctgagaatgtattcaag |
451 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
4315116 |
gaccaagaatatctttgaacttgagaatgtattcaag |
4315152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 4305854 - 4306298
Alignment:
| Q |
19 |
aagaactt-tttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcct |
117 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||| |||||| |||||| | |||||||| ||||||| ||| | ||||||| ||||| || |||| |
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| T |
4305854 |
aagaacttctttccggccagtttttccttcaaatctagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcct |
4305953 |
T |
|
| Q |
118 |
ttgtaaccttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaa |
217 |
Q |
| |
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||||||| || || ||||| |||| || || | |||| |||||||||| |||||||| || |||| |||| || ||| ||||| ||| |||||||||| |
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| T |
4305954 |
ttgtaactttgaattcatcgaaatggtcggaaacacaagcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaa |
4306053 |
T |
|
| Q |
218 |
agtggtttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggca |
317 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||| | |
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| T |
4306054 |
tatgatttttcccaccccacccatgccaactatggggatcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgagaatgacc |
4306153 |
T |
|
| Q |
318 |
attttgtctcgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctccaaga---gaggttatcagttgcaaaatgttgaa |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | ||| | |||||||| |||||||| |
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| T |
4306154 |
attttgtcttgatccctaccaaataagttagattcaccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaa |
4306253 |
T |
|
| Q |
415 |
gaccaagaatatctttgaatctgagaatgtattcaagcctagcaa |
459 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||| ||||||| |
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| T |
4306254 |
gaccaaaaatatctttgaatttgagaatgtattcaagtctagcaa |
4306298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 25 - 451
Target Start/End: Complemental strand, 4253762 - 4253345
Alignment:
| Q |
25 |
tttttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcctttgtaac |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| ||| | |||||| |||||| | ||| |||||| ||||||||||| ||||||||||| |
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| T |
4253762 |
tttttccagtcagtttttccttcaaatcacgatgaagcaactcgttgctgtttatgctacaagcattccctgtaacagactccaatatggcctttgtaac |
4253663 |
T |
|
| Q |
125 |
cttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtt |
224 |
Q |
| |
|
|| || ||||| |||| ||| ||| |||| ||||||||||||||||||| ||||||| ||||||| |||| ||||| ||||||||||||||| | ||| |
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|
| T |
4253662 |
attaaattcatcgaaatgatccgaggcacaagcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaaaattgtt |
4253563 |
T |
|
| Q |
225 |
tttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgt |
324 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||| || || || |||||| ||||||| ||| ||||||||||| |||||| |
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| T |
4253562 |
tttcccacaccacccataccaactatggggatcac------gcaagtctta-cagca--atcatcatcatctaacagtaatttgagtatggcctttttgt |
4253472 |
T |
|
| Q |
325 |
ctcgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctcc---aagagaggttatcagttgcaaaatgttgaagaccaag |
421 |
Q |
| |
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|| |||||||||||||| ||||||| | ||||||||||||| |||| |||||||| ||||| ||| || |||||| ||||||||||||||| |
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| T |
4253471 |
ctgcatccctaccaaatatgttagat---gggtcatctagagaggttgatgaagttctccaagaagagtggtgttcgattgcaatatgttgaagaccaag |
4253375 |
T |
|
| Q |
422 |
aatatctttgaatctgagaatgtattcaag |
451 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |
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| T |
4253374 |
aatatctttgaatttgagaatggattcaag |
4253345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 4309118 - 4309179
Alignment:
| Q |
398 |
agttgcaaaatgttgaagaccaagaatatctttgaatctgagaatgtattcaagcctagcaa |
459 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | | |||||||||||||| ||||||| |
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| T |
4309118 |
agttgcaatatgttgaagaccaagaatattattgattttcagaatgtattcaagtctagcaa |
4309179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 19 - 457
Target Start/End: Complemental strand, 41933213 - 41932771
Alignment:
| Q |
19 |
aagaactt-tttccagtcagtttttccttcaaatcacaatgaagtaactctttgttatttatgttacaagaactccgtgtaactgactccaatatagcct |
117 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||| |||||| |||||| | |||||||| ||||||| ||| | ||||||| ||||| || |||| |
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| T |
41933213 |
aagaacttctttccggacagtttttccttcaaatctagatgaagcaactctatattatttatattacaagcacttctagtaactgcctccatgattgcct |
41933114 |
T |
|
| Q |
118 |
ttgtaaccttcaagtcatcaaaatcatcagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaa |
217 |
Q |
| |
|
|||||||||| || ||||| |||| ||||| | |||| ||||||||||||||||||| || |||| |||| || |||| ||||| |||||||||||||| |
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|
| T |
41933113 |
ttgtaaccttgaattcatcgaaatggtcagaaacacaagcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaa |
41933014 |
T |
|
| Q |
218 |
agtggtttttcccacaccacccatgccaactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggca |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| |
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|
| T |
41933013 |
agtggtttttcccaccccacccatgccaactatggggatcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggct |
41932914 |
T |
|
| Q |
318 |
attttgtctcgatccctaccaaataagttagattcgctgacatctagagaggtggatggagttctccaaga---gaggttatcagttgcaaaatgttgaa |
414 |
Q |
| |
|
||||||| ||| || ||||||| | ||||||||| |||| |||||||| ||||| ||||||||||| | ||| ||| | |||| |||||||| |
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|
| T |
41932913 |
tctttgtctttatctcttccaaatatgctagattcgccagcatcaagagaggttgatggggttctccaagaagagtggtggtcactagcaatatgttgaa |
41932814 |
T |
|
| Q |
415 |
gaccaagaatatctttgaatctgagaatgtattcaagcctagc |
457 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| ||||| |
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| T |
41932813 |
gaccaagaatatctttgaatttgagaatggattcaagtctagc |
41932771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 152 - 456
Target Start/End: Original strand, 34802891 - 34803183
Alignment:
| Q |
152 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
251 |
Q |
| |
|
||||||||||||||||||| | ||||||| || ||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
34802891 |
acaaacccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattccacccatgctaactatg |
34802990 |
T |
|
| Q |
252 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagatt |
351 |
Q |
| |
|
|||||| | |||||||||||||| | ||| | |||| ||||||| ||| |||||||| || ||||||| |||||| ||||||| |||| || |
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|
| T |
34802991 |
gggatctc------acaagtcttatcattatcatcaccatcatctaacagtaatttgagtatcgcctctttgtctttatccctgccaaatatgttacat- |
34803083 |
T |
|
| Q |
352 |
cgctgacatctagagaggtggatggagttctccaagagaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatctgagaatgtattcaag |
451 |
Q |
| |
|
| | ||||||||||||| |||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
34803084 |
--ccggcatctagagaggtagatggagttctccaagagtgg---tcacttgcaatgtgttgaagaccaagaatatctttgaattttagaatgtattcaag |
34803178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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