View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_32 (Length: 448)
Name: NF17063_low_32
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 432
Target Start/End: Original strand, 5217085 - 5217492
Alignment:
| Q |
8 |
catcagagacgacattgacaccgatagtaattttaaaaaataacactatttagtttttgtttaagatcaccgcacatcattttagtttatgtttaaattc |
107 |
Q |
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| T |
5217085 |
catcagatacgacatcgacacccatagtaattttagaaaataacactatttaacttatgtttaagatcactgcagatcattttagcttatgtttaagttc |
5217184 |
T |
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| Q |
108 |
acgacaaatcattttgattcagatataaccatcgtaatatcaaatatatatttaatatagttatttgtgacagtgtcatgttgtacttatcagaagcggt |
207 |
Q |
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| T |
5217185 |
acgacaaatcactttgattcagatataactatcgtgataccaaatatatacttaatatagttatctgtgacggtgt-----------------aagcgtt |
5217267 |
T |
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| Q |
208 |
ggacaccaaagacgtttttcattagaaatgtcagtgttatgacataatatattatgggtttttctatcatnnnnnnnnnnnnngttgctaaagaagttag |
307 |
Q |
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| T |
5217268 |
ggacaccaaagacgtttttcaacagaaatgttagtgttatgacgtaatatattatgggtttttctatcataaaaaaaaaaaaagttgctaaagaagttag |
5217367 |
T |
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| Q |
308 |
taaccataagttactagtaaccaaagcattttgacttttcttatgaaaaagagtaacatttatttaattataatgagaattgtattgaatgttgccgaca |
407 |
Q |
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| T |
5217368 |
taaccataagttactagtaaccaaagcattttgacttttcttatgaaaaagagtaacatttatttaattataatgagaatggtcttgaatgttgccgaca |
5217467 |
T |
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| Q |
408 |
atatatacaggttgatagtgcaaac |
432 |
Q |
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| T |
5217468 |
atatatacaggttgatagtgcaaac |
5217492 |
T |
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