View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_33 (Length: 441)
Name: NF17063_low_33
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_33 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 40894965 - 40894540
Alignment:
| Q |
16 |
ataattgccatcacacaagtgggaaacgaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttg |
115 |
Q |
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| T |
40894965 |
ataattgccatcatacaagtgggaaacgaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttg |
40894866 |
T |
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| Q |
116 |
ccttcagaatcatcatcaaactaatcatcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaa |
215 |
Q |
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| T |
40894865 |
ccttcagaatcatcatcaaactaatcatcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaa |
40894766 |
T |
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| Q |
216 |
tgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgacacattcaaattctaaacaagcacacaattgaattgtactaatcatgat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40894765 |
tgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgacacattcaaattctaaacaagcacacaattgaattgaactaatcatgat |
40894666 |
T |
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| Q |
316 |
gaaacattgttcaatctgaaacaaataaaatcagaaagaacaataataccattgatgatatactcgtacgcatcagggctcaggtattttctcaaatttg |
415 |
Q |
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| T |
40894665 |
gaaacattgttaaatctgaaacaaataaaatcagaaagaacaataataccattgatgatatactcgtacgcatcagggctcaggtattttctcaaatttg |
40894566 |
T |
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| Q |
416 |
acatcaatcagaaagaacaatgatac |
441 |
Q |
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| T |
40894565 |
aaatcaatcagaaagaacaatgatac |
40894540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 127 - 365
Target Start/End: Original strand, 44153441 - 44153679
Alignment:
| Q |
127 |
atcatcaaactaatcatcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaatgtcctcagat |
226 |
Q |
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| T |
44153441 |
atcatcaaactaatcgtcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaatgtcctcagat |
44153540 |
T |
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| Q |
227 |
tctttgtcttttcctcctacaagaatcaataatcacacgacacattcaaattctaaacaagcacacaattgaattgtactaatcatgatgaaacattgtt |
326 |
Q |
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| T |
44153541 |
tctttgccttttcctcctgcatgaatcaataatcatgcggcacattcaaattctaaacaagcactcaattgaatttaactaatcataatgaaacaatctt |
44153640 |
T |
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| Q |
327 |
caatctgaaacaaataaaatcagaaagaacaataatacc |
365 |
Q |
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| T |
44153641 |
aaatctgaaacaaatgaaatcagaaaaaacaaaaatacc |
44153679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 40898055 - 40898398
Alignment:
| Q |
19 |
attgccatcacacaagtgggaaacgaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttgcct |
118 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
40898055 |
attgccatcacacgagtgggaaatgaacatctactattactattataca------gacatttttcgcttgtcattgtcgcaagagattttggttttgcct |
40898148 |
T |
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| Q |
119 |
tcagaatcatcat-caaac---taatcatcttca------gaatcatcatttgcatctgttgatttccacttctgctcatcaga---gctaagctcctcc |
205 |
Q |
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| T |
40898149 |
tcagaatcatcaaactaaggcataatcagcaccaaaaacagaatcatcatttgcatctgctgatttccacttctgcacatcagaagagctcagctcctcc |
40898248 |
T |
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| Q |
206 |
aaggttgaaatgtcctcagattctttgtcttttcctcctacaagaatcaataatcacacgacacattcaaattctaaacaagcacacaattgaattgtac |
305 |
Q |
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| T |
40898249 |
aaggttgaaatgtcctcagattctttgccttttcctcctgcatgaatcaata----------acattaaaattctaaacaagcacacaattgaattgaac |
40898338 |
T |
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| Q |
306 |
taatcatgatgaaacattgttcaatctgaaacaaataaaatcagaaagaacaataatacc |
365 |
Q |
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| T |
40898339 |
taatcaaaatgaaacaatcttaaatccgaaacaaatgaaatcagaaagaacaataatacc |
40898398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 44153937 - 44154027
Alignment:
| Q |
270 |
attcaaattctaaacaagcacacaattgaattgtactaatcatgatgaaacattgttcaatctgaaacaaataaaatcagaaagaacaataataccattg |
369 |
Q |
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| T |
44153937 |
attcaaattaaagacatgcacacagttgaattgaactaatcatgatgaaacattgt-----------caaataaaatcagaaagaacaataatacctttg |
44154025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 371
Target Start/End: Original strand, 40898662 - 40898752
Alignment:
| Q |
270 |
attcaaattctaaacaagcacacaattgaattgtactaatcatgatgaaacattgttcaatctgaaacaaataaaatcagaaagaacaataataccattg |
369 |
Q |
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| T |
40898662 |
attcaaattaaagacatgcacacggttgaattgaactaatcatgatgaaacattgt-----------caaataaaatcagaaagaacaataatacctttg |
40898750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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