View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_34 (Length: 434)
Name: NF17063_low_34
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Complemental strand, 1984842 - 1984434
Alignment:
| Q |
10 |
caaagggcctttgcatggaattaaaaaggtacttatatctgcacctctaaaagtccttaaaaaattaccttgggaaaacataacaaaccttccaggtatc |
109 |
Q |
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| T |
1984842 |
caaagggcctttgcatggaatcaaaaaggtacttatatctgcacctctaaaagtccttaaaaagttaccttgggaaaacataaccaaccttccaggaatc |
1984743 |
T |
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| Q |
110 |
aaacttgtaaaacaacctattgaacacttgttaaactctcaaaagaaagaagaggaaaaaccaaacgatgaaaactcaagtactctaaagaacaaaacac |
209 |
Q |
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| T |
1984742 |
aaacttgtaaaacaacctattgaatactttttaaacactcaaaagaaagaagaggaaaaaccaaaagatgaaaactctagtactctaaagaacaaaacac |
1984643 |
T |
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| Q |
210 |
ccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttga |
309 |
Q |
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| T |
1984642 |
ccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttttga |
1984543 |
T |
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| Q |
310 |
tgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatcc |
409 |
Q |
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| T |
1984542 |
tgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttggatcg |
1984443 |
T |
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| Q |
410 |
ggacctttg |
418 |
Q |
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| T |
1984442 |
ggacctttg |
1984434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 207 - 418
Target Start/End: Complemental strand, 1977724 - 1977513
Alignment:
| Q |
207 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
306 |
Q |
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| T |
1977724 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
1977625 |
T |
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| Q |
307 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
406 |
Q |
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| T |
1977624 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
1977525 |
T |
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| Q |
407 |
tccggacctttg |
418 |
Q |
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| T |
1977524 |
tcgggacctttg |
1977513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 1948696 - 1948889
Alignment:
| Q |
221 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
320 |
Q |
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| T |
1948696 |
gaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcatatcaagtattagttttgatgcaaaaacaa |
1948795 |
T |
|
| Q |
321 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacc |
414 |
Q |
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| T |
1948796 |
gaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatgaatcatcggttggatcgggacc |
1948889 |
T |
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