View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_35 (Length: 431)
Name: NF17063_low_35
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_35 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 9348 - 8938
Alignment:
| Q |
9 |
caaaggcaaccaataatttttatttccttcatcaaatccattaaccagcactaatacaaatttgtaccttagtttttcagacagttttggagacaatttc |
108 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9348 |
caaaggcaatcaataatttttatttccttcagcaaatccattaaccagcactaatacaaatttgtaccttagtttttcagacagttttggagacaatttc |
9249 |
T |
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| Q |
109 |
atctaagttacttcatctggaggttcttatcttaagtgcagaaaacttgactaatgaaatcctgccttcactaaggggatttacatctttgaaggaacta |
208 |
Q |
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| T |
9248 |
atctaagttactgcatctggaggttcttatcttaagtgcagaaaacttgactaatgaaatcctgccttcactaaggggatttacatctttgaaggaacta |
9149 |
T |
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| Q |
209 |
gttttggatggcattggattggactcggatcttcattttcaaggtaattaacactttccattttcttttatcggaggaattaatgttgattgattgttgc |
308 |
Q |
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| T |
9148 |
gttttggatggcattggattggactcggatcttcattttcaaggtaattaacactttccattttcttttatcggaggaattaatgttgattgattgttgc |
9049 |
T |
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| Q |
309 |
ataccagtaagtcggtaacacaatatattaatttaacatgtaggattgtgcgctatattgaagaaccttgagatccttgacctttcaaacaacaacttca |
408 |
Q |
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| T |
9048 |
ataccagtaagtcggtaacacaatatattaatttaacatgtaggattgtgcgctatattgaagaaccttgagatccttgacctttcaaacaacaacttca |
8949 |
T |
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| Q |
409 |
aagacattgat |
419 |
Q |
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| T |
8948 |
aagacactgat |
8938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 70 - 255
Target Start/End: Complemental strand, 24266687 - 24266502
Alignment:
| Q |
70 |
ttgtaccttagtttttcagacagttttggagacaatttcatctaagttacttcatctggaggttcttatcttaagtgcagaaaacttgactaatgaaatc |
169 |
Q |
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||||||| ||| ||||||||||||||||||||||||| |||| ||||| || ||| ||||||| ||| | ||||| | || |||| |||||||||| |
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| T |
24266687 |
ttgtaccatagattttcagacagttttggagacaattccatcaaagttgctacatttggaggtccttgacataagttacaacaatttgagtaatgaaatc |
24266588 |
T |
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| Q |
170 |
ctgccttcactaaggggatttacatctttgaaggaactagttttggatggcattggattggactcggatcttcattttcaaggtaa |
255 |
Q |
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| T |
24266587 |
ctgccttcactaaggggattcaaatctttgaaggaactccatttgagtgtgattggattggactcagatcttcatatacaaggtaa |
24266502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 24260754 - 24260677
Alignment:
| Q |
335 |
attaatttaacatgtaggattgtgcgctatattgaagaaccttgagatccttgacctttcaaacaacaacttcaaaga |
412 |
Q |
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| T |
24260754 |
attaatttaacgtgcaggattatgcgccatattaaagaatctcgagatccttgacctttcgaacaacaacttcaaaga |
24260677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 24248834 - 24248774
Alignment:
| Q |
72 |
gtaccttagtttttcagacagttttggagacaatttcatctaagttacttcatctggaggt |
132 |
Q |
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| T |
24248834 |
gtaccatagattttcacacagttttggagacactttcatcaaagttgttgcatctggaggt |
24248774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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