View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_38 (Length: 424)
Name: NF17063_low_38
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 40728439 - 40728862
Alignment:
| Q |
1 |
tactcttcatcatggccttaaatccataagagtcttctaaaacggtaacaacactagctaattgccaaattattgtaagatacaaaatcccaacaaagta |
100 |
Q |
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| T |
40728439 |
tactcttcatcatggccttaaatccatatgagtcttctaaaacggtaacaacactagctaattgccaaattattgtaagatacaaaatcccaacaaagta |
40728538 |
T |
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| Q |
101 |
taagattccaataataactaaaattgcaacacccccactcttataattaattgaaagtgcccaaataatgaaaactagtattgccaaagtattatacacn |
200 |
Q |
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| T |
40728539 |
taagattccaataataactaaaattgcaacacccccactcttataattaattgaaagtgcccaaataatgaaaactagtattgccaaagtattatacaca |
40728638 |
T |
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| Q |
201 |
nnnnnnnnnnnnnntgtgcataagaaagtgaccatgagtctcttccaaacctttggtacaacgccgaagacccttttgaatgttacctctcttgcagtat |
300 |
Q |
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| T |
40728639 |
aaaaatgcaaaaaatgtgcataagaaagtgaccatgagtctcttccaaacctttggtacaacaccgaagacccttttgaatgttacctctcttgcagtat |
40728738 |
T |
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| Q |
301 |
aaatagatgctattgtataaaccactgcagaggttgatagcaaagagaagattagaagcgaagtgaagtaaacaagtttatagagcaagaaagtggtcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40728739 |
aaatagatgctattgtataaaccactgcagaggttgatagcaaagagaagattagaagagaagtgaagtaaacaagtttaaagagcaagaaagtggtcca |
40728838 |
T |
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| Q |
401 |
ttcggaagtgattatgtcggaaag |
424 |
Q |
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| T |
40728839 |
ttcggaagtgattatgtcggaaag |
40728862 |
T |
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