View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_39 (Length: 424)
Name: NF17063_low_39
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 90 - 408
Target Start/End: Complemental strand, 32950352 - 32950018
Alignment:
| Q |
90 |
atacatacccttgaaggtacgtcataaaatgatgatgtagcataaagagttttcggcccgcttcctcctccaccgttccatatcccaccaaat------- |
182 |
Q |
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| T |
32950352 |
atacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgcccacttcctcctccaccgttccatatcccaccaaaactacatt |
32950253 |
T |
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| Q |
183 |
--------ggacatggatcattcactttaagagccttaagaattatctctttgcattcatcaaagttggggccagaagcaagggaaaatgccttatactc |
274 |
Q |
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| T |
32950252 |
ttccataaggacatggatcattcactttaagtgccttaagaattatctctttgcattcatcaaagttggggccagaagcaggagaaaatgccttatactc |
32950153 |
T |
|
| Q |
275 |
ctctcctgaatatgtatatgtgcctttgcagaataaaaaggttcatgttataagaatggtttatgctagaaagatatgtaaaaatcaatgaagttgtgtg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
32950152 |
ctctcctgaatatgtatatgtgcctttgcagaataaaaaggttcatgttataagaatggtttatgctagaaagatatgtgtaaatcaatgaagttgcgtg |
32950053 |
T |
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| Q |
375 |
t-tttaccatgatagccagctaaaatgcaaggatt |
408 |
Q |
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| T |
32950052 |
tgtttaccatgatagccagctaaaatgcaaggatt |
32950018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 90 - 408
Target Start/End: Complemental strand, 32943171 - 32942837
Alignment:
| Q |
90 |
atacatacccttgaaggtacgtcataaaatgatgatgtagcataaagagttttcggcccgcttcctcctccaccgttccatatcccaccaaat------- |
182 |
Q |
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| T |
32943171 |
atacatacccctgtaggcacgtaataaaatgatgatgtaacataaagagttttctgcccacttcctcctccaccgttccatatcccaccaaaactacatt |
32943072 |
T |
|
| Q |
183 |
--------ggacatggatcattcactttaagagccttaagaattatctctttgcattcatcaaagttggggccagaagcaagggaaaatgccttatactc |
274 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
32943071 |
tcccataaggacatggatcattcactttaagtgccttaagaattatctctttgcattcatcaaagttggagccagaagcaggagaaaatgccttatactc |
32942972 |
T |
|
| Q |
275 |
ctctcctgaatatgtatatgtgcctttgcagaataaaaaggttcatgttataagaatggtttatgctagaaagatatgtaaaaatcaatgaagttgtgtg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
32942971 |
ctctcctgaatatgtatatgtgcctttgcagaataaaaaggttcatgttataagaatggtttatgctagaaagatatgtgtaaatcaatgaagttgcgtg |
32942872 |
T |
|
| Q |
375 |
t-tttaccatgatagccagctaaaatgcaaggatt |
408 |
Q |
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| T |
32942871 |
tgtttaccatgatagccagctaaaatgcaaggatt |
32942837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 32935581 - 32935474
Alignment:
| Q |
183 |
ggacatggatcattcactttaagagccttaagaattatctctttgcattcatcaaagttggggccagaagcaagggaaaatgccttatactcctctcctg |
282 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||||||| | ||||||| ||||| |||||| |||||| |
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| T |
32935581 |
ggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagtttgagccagaagaaggggaaaaagccttgtactccactcctg |
32935482 |
T |
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| Q |
283 |
aatatgta |
290 |
Q |
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|||||||| |
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| T |
32935481 |
aatatgta |
32935474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 32927319 - 32927216
Alignment:
| Q |
183 |
ggacatggatcattcactttaagagccttaagaattatctctttgcattcatcaaagttggggccagaagcaagggaaaatgccttatactcctctcctg |
282 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||| | ||| ||| ||||||| ||| |||| | |
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| T |
32927319 |
ggacatggatcattcactttaagaaccttaagagttatctctttgcattcatcaaagtttgagccagaagaagggggaaacaccttatattccactcccg |
32927220 |
T |
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| Q |
283 |
aata |
286 |
Q |
| |
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|||| |
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| T |
32927219 |
aata |
32927216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 32927370 - 32927336
Alignment:
| Q |
147 |
ccgcttcctcctccaccgttccatatcccaccaaa |
181 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
32927370 |
ccgcttcctcctccaccattccatatcccaccaaa |
32927336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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