View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_41 (Length: 420)
Name: NF17063_low_41
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 41122305 - 41122713
Alignment:
| Q |
1 |
aaatacacaaattggtgcaaattttaatacaagttttatggattcaacaaaggaagctcagctgaatggtgacaatggtggtgttgatccacaggaaaaa |
100 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41122305 |
aaatactccaattggtgcaaatttgaatacaagttttatggattcaacaaaggaagcacagctgaatggtgacaatggtggtgttgatccacagggaaaa |
41122404 |
T |
|
| Q |
101 |
ccttaagtgagcacattattctatgtttttctggccaattggttaagattacgcgtatcactgtattacaaattcaagaatcaagattattttaattctt |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||| | |||| |||||||||||||||||||||||||||||||| |
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| T |
41122405 |
ccttaagtgagcaaattattctatgtttttctggccaattggttaagatcatgtgtatcattttatttcaaattcaagaatcaagattattttaattctt |
41122504 |
T |
|
| Q |
201 |
taatggtatctttctttgttttttggtatattcagctgtatctttctctcagtgtatggtgtatattgcgatataagaaattaaagggaaaccattttta |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41122505 |
tagtggtatctttctttgttttttggtatattcagctgtatctttctctcagtgtatggtgtatattgcgatataagaaattaaagggaaaccattgtta |
41122604 |
T |
|
| Q |
301 |
catcattataagttgtatagtttagatttggcctctattttgcaatgccaagttacttgcttatagtgcatgcttacaacgaataaggttgtatgattgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41122605 |
catcattataagttgtatagtttagatttggcctctattttgcaatgccaagttacttgcttatagtgcatgcttacaacgaataaggttgtatgattgt |
41122704 |
T |
|
| Q |
401 |
agtagaatt |
409 |
Q |
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| T |
41122705 |
agtagaatt |
41122713 |
T |
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