View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_42 (Length: 413)
Name: NF17063_low_42
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Complemental strand, 33141299 - 33140918
Alignment:
| Q |
14 |
actgacaaagatgatctcacactcaaatgaccataaagaagaccaagaagaaaatgcaataattaaacataggacatatagtttgccgatgccaaagacc |
113 |
Q |
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| T |
33141299 |
actgacaaagatgatctcacactcaaatgaccataaagaagaccaagaagaaaatgcaataattaaacataggacatatagtttgccgatgccaaagacc |
33141200 |
T |
|
| Q |
114 |
agtgaagctagctaatgttcagcattaaccttatcgccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33141199 |
agtgaagctagctaatgttcagcattaaccttatcgccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcga |
33141100 |
T |
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| Q |
214 |
taaaatctggaatttttccagcaacattaggaatctcaaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgttctctaaatgcgaattc |
313 |
Q |
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| T |
33141099 |
taaaatctggaattttcccagcaacattaggaatctcaaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgttctctaaatgcgaattc |
33141000 |
T |
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| Q |
314 |
aaagcctttattgatcgtcacatctttccatttgtcaaactcggacactgtcttcaaaactgtagtcccatgaccaacagaa |
395 |
Q |
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| T |
33140999 |
aaagcctttattgatcgccacatctttccatttgtcaaactcggacactgtcttcaaaactgaagtcccatgaccaacagaa |
33140918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 150 - 393
Target Start/End: Complemental strand, 33159783 - 33159540
Alignment:
| Q |
150 |
ccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaatttttccagcaacattaggaatct |
249 |
Q |
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| T |
33159783 |
ccattatggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatct |
33159684 |
T |
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| Q |
250 |
caaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgttctctaaatgcgaattcaaagcctttattgatcgtcacatctttccatttgtc |
349 |
Q |
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| T |
33159683 |
caaggtgagagcaaatatgaacagaactagcaatcgtgttatgatactctctaaatgagtattcaaagcccttggtgctcacatcacctttccatgtgcc |
33159584 |
T |
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| Q |
350 |
aaactcggacactgtcttcaaaactgtagtcccatgaccaacag |
393 |
Q |
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| T |
33159583 |
aaactctgcaaatgtcttcaaaactgtagtcccatgaccaacag |
33159540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 150 - 393
Target Start/End: Complemental strand, 33182627 - 33182384
Alignment:
| Q |
150 |
ccattatggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaatttttccagcaacattaggaatct |
249 |
Q |
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||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||| |
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| T |
33182627 |
ccattatggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatct |
33182528 |
T |
|
| Q |
250 |
caaggtgagagcaaatatgaacggtactagcaaccttgtgatgatgttctctaaatgcgaattcaaagcctttattgatcgtcacatctttccatttgtc |
349 |
Q |
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| T |
33182527 |
caaggtgagagcaaatatgaacagaactagcaatcgtgttatgatactctctaaatgagtgttcaaagcccttggtgctcacatcacctttccatgtgcc |
33182428 |
T |
|
| Q |
350 |
aaactcggacactgtcttcaaaactgtagtcccatgaccaacag |
393 |
Q |
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| T |
33182427 |
aaactctgcaaatgtcttcaaaactgtagtcccatgaccaacag |
33182384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 155 - 393
Target Start/End: Original strand, 33286948 - 33287186
Alignment:
| Q |
155 |
atggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaatttttccagcaacattaggaatctcaagg |
254 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||| |||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||| |
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| T |
33286948 |
atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccagcaactttatgaatctcaagg |
33287047 |
T |
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| Q |
255 |
tgagagcaaatatgaacggtactagcaaccttgtgatgatgttctctaaatgcgaattcaaagcctttattgatcgtcacatctttccatttgtcaaact |
354 |
Q |
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| T |
33287048 |
tgagagcaaagatgaaaggaaggagcaaccttcttatgatgttcattaaatgcatgttcaaagccctttttaattgccacttctttccatttgtcaaact |
33287147 |
T |
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| Q |
355 |
cggacactgtcttcaaaactgtagtcccatgaccaacag |
393 |
Q |
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| T |
33287148 |
cggacactgttttcgacactgtagtaccatggccaacag |
33287186 |
T |
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