View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_43 (Length: 408)
Name: NF17063_low_43
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 1847844 - 1848167
Alignment:
| Q |
5 |
ttagttggacccaaatccgtttaagctttaggagcttacaaatgatcaactcaatggtctttttgggtttaaagaaagcttgtaagaactcggaacccta |
104 |
Q |
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| T |
1847844 |
ttagttggacccaaatccgtttaagctttaggagcgtacaaatgatcaactcaatggtttttttgggtttaaagaaagcttgtaagaactcggaacccta |
1847943 |
T |
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| Q |
105 |
caaatgattaattttgacacgcgtcactccatcaaattcaatcgcaatcttccatcactaccagatcaacg-ctgtcaccatcatgcacttcaaactcct |
203 |
Q |
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| T |
1847944 |
caaatgattaattttgacacgtgtcactccatcaaattcaatcgcagtcttccatcactaccagatcaacgactgtcgccatcatgcacttcaaactcct |
1848043 |
T |
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| Q |
204 |
acacgccatatcactaatctgcgtgccagattagctccaaacaaacagtaatagttgaatatccaataaaaaccaaccgccaagatcataacctattcac |
303 |
Q |
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| T |
1848044 |
acacgccatatcactaatctgcgtgccagattagctccaaacaaacagtaatagttgagtatccaataaaaaccaaccgccaacatcataacctattcac |
1848143 |
T |
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| Q |
304 |
ctcttggttgatttcaaaattcac |
327 |
Q |
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| T |
1848144 |
ctcttgcttgatttcaaaattcac |
1848167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 1848186 - 1848268
Alignment:
| Q |
323 |
ttcactattttcggtgctttaaactcatcactcgcaaagcaaagtagaacaacaagtctcaatgttgattttcatttcaattc |
405 |
Q |
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| T |
1848186 |
ttcactattttcggtgctttaaactcatcactcgcaaagcaaagtaaaacaacaagtctcaatgttgattttcatttcaattc |
1848268 |
T |
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