View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_47 (Length: 395)
Name: NF17063_low_47
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 379
Target Start/End: Original strand, 3918661 - 3919030
Alignment:
| Q |
12 |
atcatcaaactaccattctttacattagaattagctcctttggttctaaatcctaacagcttagttgtgaatgtcttattcattgttgagtccagtttat |
111 |
Q |
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| T |
3918661 |
atcatcaaactaccattctttacattagaattagctcctttggttctaactcctaacagcttagttgtgaatgtcttattcattgttgagtccagtttat |
3918760 |
T |
|
| Q |
112 |
caatgaagaaccaaattgaaatgaaagcttacgcattttggcaaaggccaatagtggtttatgtctcaaccacacctactcatagnnnnnnnnnnnaaat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3918761 |
caatgaagaaccaaattgaaatgaaagcttacgcattttggcaaaggccaatagtggtttatgtctcaaccacacctactcatagtttttttttttcaat |
3918860 |
T |
|
| Q |
212 |
--acgtactcatatcttagcatcttcaaatgttaaaagagtgcaggcccgttggccattacctgaatagaaaatgtcaaattacctgagaagcaaagtgt |
309 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918861 |
acacctactcatatcttagcatcttcaaatgttaaaagagtgcaggcccgttggccattacctgaatagaaaatgtcaaattacctgagaagcaaagtgt |
3918960 |
T |
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| Q |
310 |
ctgtgtccaggtgataaagtacttgaggctcggcccattgctctctcgagcaagatgcgcatggatttct |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918961 |
ctgtgtccaggtgataaagtacttgaggctcggcccattgctctctcgagcaagatgcgcatggatttct |
3919030 |
T |
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