View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_5 (Length: 702)
Name: NF17063_low_5
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 11 - 687
Target Start/End: Original strand, 40270940 - 40271617
Alignment:
| Q |
11 |
cacagaaacacactggcaccacctaataataaattttatagtcaatnnnnnnntctttgatcaaaatacacaacaagcaactatgtagtaaagcaacctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40270940 |
cacagaaacacactggcaccacctaataataaattttatagtcaataaaaaaatctttgatcaaaatacacaacaagcaactatgtagtaaagcaacctt |
40271039 |
T |
|
| Q |
111 |
gcaacactcttgagattttcaatgtgttcatcaatcgtttgttgagagacataaaatggcccattgtgaggttgctgaatttgaatggctccagcagaat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
40271040 |
gcaacactcttgagattttcaatgtgttcatcaatcgtttgttgagacacataaaatggcccattgtgaggtcgctgaattcgaatggctccagcagaat |
40271139 |
T |
|
| Q |
211 |
ctctggcaggctgatcatacagtttaaaattatttttggtgnnnnnnn-caggttagaaacaacaaacggttaatattagagaatagttttgatacacgg |
309 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40271140 |
ctctgacaggctgatcatacagtttaaaattattttttgtgaaaaaaaacaggttagaaacaacaaacggttaatattagagaataattttgatacacgg |
40271239 |
T |
|
| Q |
310 |
tcaaagtaaattttttacactgtcaaccaatcacaactcatcacttgtctgacttttaagttaaatatgataatctcaaacttttttattgttcaaacgg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40271240 |
tcaaagtaaattttttacactgtcaaccaatcacaactcatcatttgtatgacttttaagttaaatatgataatctcaaacttttttattgttcgaacgg |
40271339 |
T |
|
| Q |
410 |
ttatgactgactgaaagtgtaaaatatgtttacactgttggtacatatgaattaaatcattaatattattagccagagttgataaaatgtaaataggaag |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40271340 |
ttatgactgactgaaagtgtaaaatatgtttacactgttggtacatatgaattaaatcattaatattattagccagagttgataaaatgtaaataggaag |
40271439 |
T |
|
| Q |
510 |
tagacacataagaaaaatagatattgcaatctgtttttagaattcaaaatttctattataatatcatatggtctgagtgtaatgcatctaatattttaga |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40271440 |
tagacacataagaaaaatagatattgcaatctgtttttagaattcaaaatttctattataatatcatatggtctgagtgtaatgcatctaattttttaga |
40271539 |
T |
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| Q |
610 |
aacagaaatagtaaagttcagagtttaagtacacataatgtgaagttgattttatttaagcatatcaaatgatcaaat |
687 |
Q |
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| T |
40271540 |
aacagaaatagtaaagttcagagtttaagtacacataatgtgaagttgattttatttaagcatatcaaatgatcaaat |
40271617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 40283712 - 40283776
Alignment:
| Q |
134 |
gtgttcatcaatcg-tttgttgagagacataaaatggcccattgtgaggttgctgaatttgaatgg |
198 |
Q |
| |
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|||||||||||||| |||| | |||||||||||||||||| ||| ||||| |||||||| |||||| |
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| T |
40283712 |
gtgttcatcaatcgctttgct-agagacataaaatggccctttgggaggtcgctgaattcgaatgg |
40283776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 16487712 - 16487540
Alignment:
| Q |
297 |
ttttgatacacggtcaaagtaaattttttacactgtcaaccaatcacaactcatcacttgtctgacttttaagttaaatatgat--aatctcaaactttt |
394 |
Q |
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||||||||||| ||||| ||||| |||||||||| | |||||||||||| ||||| |||| | ||||||||| || ||||||| | ||||| ||| |
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| T |
16487712 |
ttttgatacactgtcaatgtaaactttttacactattaaccaatcacaaaccatcaattgtataacttttaaggtatatatgattggaagtcaaatattt |
16487613 |
T |
|
| Q |
395 |
ttattgttcaaacggttatgactgactgaaagtgtaaaatatgtttacactgttggtacatatgaattaaatc |
467 |
Q |
| |
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| T |
16487612 |
ttattgatccaatggttatgattgattgacagagtgaaaaatatttacactgttagtgcatatcaattaaatc |
16487540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 4865310 - 4865261
Alignment:
| Q |
297 |
ttttgatacacggtcaaagtaaattttttacactgtcaaccaatcacaac |
346 |
Q |
| |
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|||||||| || |||| ||| |||||||||||||||||| |||||||||| |
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| T |
4865310 |
ttttgatatactgtcagagtgaattttttacactgtcaaacaatcacaac |
4865261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 21815198 - 21815370
Alignment:
| Q |
297 |
ttttgatacacggtcaaagtaaattttttacactgtcaaccaatcacaactcatcacttgtctgacttttaagttaaatatgat--aatctcaaactttt |
394 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||| | |||||||||||| ||||| |||| | ||||||||| || ||||||| | ||||| ||| |
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| T |
21815198 |
ttttgatacactgtcaatgtaaactttttacactattaaccaatcacaaaccatcaattgtataacttttaaggtatatatgattggaagtcaaatattt |
21815297 |
T |
|
| Q |
395 |
ttattgttcaaacggttatgactgactgaaagtgtaaaatatgtttacactgttggtacatatgaattaaatc |
467 |
Q |
| |
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|||||| || || |||||||| ||| ||| || || ||| || ||||||||||| || ||||| ||||||||| |
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| T |
21815298 |
ttattgatccaatggttatgattgattgacagagtgaaaaatatttacactgttagtgcatatcaattaaatc |
21815370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 467
Target Start/End: Original strand, 39156608 - 39156788
Alignment:
| Q |
288 |
agagaatagttttgatacacggtcaaagtaaattttttacactgtcaaccaatcacaactcatcacttgtctgacttttaagttaaatatga-taatctc |
386 |
Q |
| |
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||||| || |||| |||||| ||| | ||||| |||||||||| | |||||||||||| ||||| |||| ||||||||||| || ||||| | | || |
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| T |
39156608 |
agagattaattttaatacaccgtcgatgtaaactttttacactattaaccaatcacaaaccatcatttgtatgacttttaaggtatgtatgattgaagtc |
39156707 |
T |
|
| Q |
387 |
aaacttttttattgttcaaacggttatgactgactgaaagtgtaaaatatgtttacactgttggtacatatgaattaaatc |
467 |
Q |
| |
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||| ||||||||| || || |||||||| ||| ||| || |||||| || |||||| |||| || ||||| ||||||||| |
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| T |
39156708 |
aaatatttttattgatccaatggttatgattgattgacagagtaaaaaatatttacattgttagtgcatatcaattaaatc |
39156788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 22237771 - 22237827
Alignment:
| Q |
324 |
ttacactgtcaaccaatcacaactcatcacttgtctgacttttaagttaaatatgat |
380 |
Q |
| |
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||||||||||||||||||| ||||||||| || | ||||||||||| || ||||||| |
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| T |
22237771 |
ttacactgtcaaccaatcataactcatcaattatatgacttttaaggtagatatgat |
22237827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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