View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_50 (Length: 379)
Name: NF17063_low_50
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 32189043 - 32188801
Alignment:
| Q |
27 |
acttaacttgatttcatattctcagatgtgatgtgagacttgaactgaccnnnnnnncgttcatgtgctatcattatattttttgaaaattaaaaataga |
126 |
Q |
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| T |
32189043 |
acttaacttgatttcatattctcagatgtgatgtgagacctgaactgaccaaaaaaacgttcatgtgctatcattatattttttgaaaattaaaaataga |
32188944 |
T |
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| Q |
127 |
gaaattgtatgatatatagtactgtactagtttatttatcttgatcttctaaaatttacgtgcatttcaaaaatacgtaattaaatggtacccactgaat |
226 |
Q |
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| T |
32188943 |
gaaattgtttgatata--gtattgta---gtttatttatcttgatcttttaaaatttacgtgcatttcaaaaatacgtaattaaatggtacccactgaat |
32188849 |
T |
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| Q |
227 |
ctaacattcgatgtaaaattacaatttcccttgaataattaaatacaa |
274 |
Q |
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| T |
32188848 |
ctaacatttgatgtaaaattacaatttcccttgaataattaaatacaa |
32188801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 32188761 - 32188700
Alignment:
| Q |
318 |
taatataaatgcttttggtgtggttattttgaggtgcatacataatacttcgtcatcctttt |
379 |
Q |
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| T |
32188761 |
taatataaatgcttttggtgtggttattttgaggtgcatacataatacttcgtcatcctttt |
32188700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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