View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_51 (Length: 379)
Name: NF17063_low_51
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_51 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 38129955 - 38130316
Alignment:
| Q |
18 |
gtacatgggtatttcatgcctgtaatttaattgaagccctagaggaaattgaacttgaggagctacttgagctgcaggaacaagaggtatttgaggtact |
117 |
Q |
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| T |
38129955 |
gtacatgggtatttcatgcctgtaatttaattgaagccctagaggaaattgaacttgaggagctacttgagctgcaggaacaagaggtatttgaggtact |
38130054 |
T |
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| Q |
118 |
ggatggaacacattagtgtagtcccacgaggttctgttaacaggagaaatttgaagctcttcctcaaatctatttctcatggactcaagagattgcctaa |
217 |
Q |
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| T |
38130055 |
ggatggaacacattagtgtagtcccacgaggttctgttaacaggagaaatctgaagctcttcctcaaatctatttctcatggactcaagagattgcctaa |
38130154 |
T |
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| Q |
218 |
ccaggatgtacccaagatggggatcaagctggatactgcggatattgcccctatatctcacaacgccgtggaacaaggcaaacatctccaagaatgtcca |
317 |
Q |
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| T |
38130155 |
ccaggatgtacccaagatggggatcaagctggatactgcggatattgcccctatatctcacaacgccgtggaacaaggcaaacatctccaagaatgtcca |
38130254 |
T |
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| Q |
318 |
agaaattctgaaagaagatatgaaaacattattgtaaaaaccttaatgtccaagaaattctc |
379 |
Q |
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| T |
38130255 |
agaaattctgaaagaagatatgaaaacattattgtaaaaaccttaatgtccaagaaattctc |
38130316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 38130299 - 38130347
Alignment:
| Q |
310 |
aatgtccaagaaattctgaaagaagatatgaaaacattattgtaaaaac |
358 |
Q |
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| T |
38130299 |
aatgtccaagaaattctcaaagaagatatgaaaacattattgcaaaaac |
38130347 |
T |
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