View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_52 (Length: 379)
Name: NF17063_low_52
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 18102661 - 18103027
Alignment:
| Q |
1 |
tctgtcgaggaagctggagagtataaggagattgttgtgagtatattgaaggaagttggagcaccgaatttgtcagannnnnnncctatgttgaagattt |
100 |
Q |
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| T |
18102661 |
tctgtcgaggaagctggagagtataaggagattgttgtgagtatattgaaggaagttggagcaccgaatttgtcagatttttttcctatgctgaagattt |
18102760 |
T |
|
| Q |
101 |
ttgatttgcaaggtattagaaggcgttctgttatttctgttaagaaggttttgagtatttttaggagatttgttggggaaaggttgaagatgagggaagg |
200 |
Q |
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| T |
18102761 |
ttgatttgcaaggtattagaaggcgttctgttatttctgttaagaaggttttgagtatatttaggagatttgttggggaaaggttgaagatgagggaagg |
18102860 |
T |
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| Q |
201 |
tactggttctattgggaatggtgatgtgcttgatgctttacttaacatttctttggatgatgggaagattgagatggataaagatgagattgaacatttg |
300 |
Q |
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| T |
18102861 |
tactggttctattgggaatggtgatgtgcttgatgctttacttaacatttctttggatgatgggaagattgagatggataaagatgagattgaacatttg |
18102960 |
T |
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| Q |
301 |
ttgatggtatgttttcttcgattccttctatatttaagtgtttgaatttttggtatctaattatatt |
367 |
Q |
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| T |
18102961 |
ttgatggtatgttttctttgattctttctatatttaagtgtttgaatatttggtatctaattatatt |
18103027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 18092523 - 18092881
Alignment:
| Q |
7 |
gaggaagctggagagtataaggagattgttgtgagtatattgaaggaagttggagcaccgaatttgtcagannnnnnncctatgttgaagatttttgatt |
106 |
Q |
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| T |
18092523 |
gaggaagctggagagtataaggagattgttgtgagtatattgaaggaagttggagcaccgaatttgtcggatttttttcctatgttgaaggtttttgatt |
18092622 |
T |
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| Q |
107 |
tgcaaggtattagaaggcgttctgttatttctgttaagaaggttttgagtatttttaggagatttgttggggaaaggttgaagatgagggaaggtactgg |
206 |
Q |
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| T |
18092623 |
tgcaaggtattagaaggcgttctgttgtttctgttaagaaggttttgagtatatttaggagttttgttggggaaaggttgaagatgagggaaggtactgg |
18092722 |
T |
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| Q |
207 |
ttctattgggaatggtgatgtgcttgatgctttacttaacatttctttggatgatgggaagattgagatggataaagatgagattgaacatttgttgatg |
306 |
Q |
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| T |
18092723 |
ttctattgggaatgatgatgttctagatgctttgctcaatatttctttggatgatgggaagattgagatggataaagatgagattgaacacttattgctg |
18092822 |
T |
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| Q |
307 |
gtatgttttcttcgattccttctatatttaagtgtttgaatttttggtatctaattatatt |
367 |
Q |
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| T |
18092823 |
gtatgttttctctgattccttctctatttaagttttttaatctt--gtatctaattctatt |
18092881 |
T |
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Back To:
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