View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_54 (Length: 368)
Name: NF17063_low_54
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 43503015 - 43502670
Alignment:
| Q |
1 |
accagaacaaagctccatgacaatatggacatagagagcatcctcataggcacccttgatggtaacaatgttcttgtgaccagccaaatgatgcataatc |
100 |
Q |
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| T |
43503015 |
accagaacaaagctccatgacaatatggacatagagagcatcctcataggcacccttgatggtaacaatgttcttgtgaccagccaaatgatgcataatc |
43502916 |
T |
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| Q |
101 |
tgaatttctctgcgaacatcctcaacatcctccttggaaatgagcttcctcttagagatggatttgcaagcatattcaatggaggtggaattatcgatgg |
200 |
Q |
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| T |
43502915 |
tgaatttctctgcgaacatcctcaacatcctccttggaaatgagcttcctcttagagatggatttgcaagcatattcaatggaggtggaattatcgatgg |
43502816 |
T |
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| Q |
201 |
ctaagaaagtggtgccaaattgaccttgaccaagcttgcggccaagagtgtagagatcacgaatgttgggagtcttatgacctaagacataataagtctg |
300 |
Q |
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| T |
43502815 |
ctaagaaagtggtgccaaattgaccttgaccaagcttgcggccaagagtgtagagatcacgaatgttgggagtcttatgacctaagacataataagtctg |
43502716 |
T |
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| Q |
301 |
attatcagggccgcggcgcatggcgtcgttcttaaagttgaaggaa |
346 |
Q |
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| T |
43502715 |
attatcagggccgcggcgcatggcgtcgttcttaaagttgaaggaa |
43502670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 18399977 - 18399922
Alignment:
| Q |
77 |
tgaccagccaaatgatgcataatctgaatttctctgcgaacatcctcaacatcctc |
132 |
Q |
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||||| |||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
18399977 |
tgaccggccaaatgatgcattatctgaatttctcttctcacatcctcaacatcctc |
18399922 |
T |
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