View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_61 (Length: 349)
Name: NF17063_low_61
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_61 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 85 - 349
Target Start/End: Complemental strand, 6365731 - 6365467
Alignment:
| Q |
85 |
ttatttatgtaatgagccagcttatattacccatcttcatttaaacgtgttgttatttagtaaattaattatgtaaaaaacatataataatgaacaataa |
184 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365731 |
ttatttatgtaatgtgccagcttatattacccatcttcatttaaatgtgttgttatttagtaaattaattatgtaaaaaacatataataatgaacaataa |
6365632 |
T |
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| Q |
185 |
acaattatttcttttgaactaaccttgcacctatcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaag |
284 |
Q |
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| T |
6365631 |
acaattatttcttttgaactaaccttgcacctatcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaag |
6365532 |
T |
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| Q |
285 |
atagtgtaatacatttaagcattaaagatgagttcattggtgaaaggtctctttgataagcacca |
349 |
Q |
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| T |
6365531 |
atagtgtaatacatttaagcattaaagatgagttcattggtgaaaggtctctttgataagcacca |
6365467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 6393178 - 6393072
Alignment:
| Q |
217 |
atcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatgag |
316 |
Q |
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||||| || ||||||||| |||||||||| |||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6393178 |
atcaagtagtataaataccaagcatccccatggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaagcatcaaagatgac |
6393079 |
T |
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| Q |
317 |
ttcattg |
323 |
Q |
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||||||| |
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| T |
6393078 |
ttcattg |
6393072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 6412319 - 6412212
Alignment:
| Q |
217 |
atcaactactataaatactaagcatccc-cttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatga |
315 |
Q |
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||||| |||||||||||||||||||||| | ||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
6412319 |
atcaagtactataaatactaagcatcccacaaggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaagcatcaaagatga |
6412220 |
T |
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| Q |
316 |
gttcattg |
323 |
Q |
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||||||| |
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| T |
6412219 |
cttcattg |
6412212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 322
Target Start/End: Complemental strand, 6373263 - 6373157
Alignment:
| Q |
217 |
atcaactactataaatactaagcatcccct-tggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaagcattaaagatga |
315 |
Q |
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||||| ||||||||||| ||||||||||| |||| |||| |||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
6373263 |
atcaagtactataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaagcatcaaagatga |
6373164 |
T |
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| Q |
316 |
gttcatt |
322 |
Q |
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|||||| |
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| T |
6373163 |
cttcatt |
6373157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 6356169 - 6356084
Alignment:
| Q |
217 |
atcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaa |
302 |
Q |
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||||||||||||||||||||| || ||| |||| |||| |||||||| |||||||||||||||| | |||||||||||||||||| |
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| T |
6356169 |
atcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccatatatagtgtaatacatttaa |
6356084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 7463269 - 7463185
Alignment:
| Q |
218 |
tcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacatttaa |
302 |
Q |
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|||||||||||| |||||||||| |||| |||| |||| ||||| || |||||||||||||||||| ||||||||||| |||||| |
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| T |
7463269 |
tcaactactatagatactaagcacccccatggttacaagacacaggcatttctttcatttaccaaatatagtgtaatatatttaa |
7463185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 6373656 - 6373607
Alignment:
| Q |
257 |
acacaagcttttctttcatttaccaaagatagtgtaatacatttaagcat |
306 |
Q |
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|||||||||||||||||||| ||||||||| |||||||| ||||||||| |
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| T |
6373656 |
acacaagcttttctttcattagccaaagatattgtaatacgtttaagcat |
6373607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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