View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_63 (Length: 346)
Name: NF17063_low_63
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_63 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 43851403 - 43851086
Alignment:
| Q |
17 |
gtattcaagccggcaatttgtgtcacatattatatatactatatactatgaattcaaacttagtagaaagggaaattcattcactataaaacaatccaat |
116 |
Q |
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| T |
43851403 |
gtattcaagccggcaatttgtgtcacatattatatatactatatactatgaattcaaacttagtagaaagggaaattcattcactataaaacaatccaat |
43851304 |
T |
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| Q |
117 |
aaaaagctgccatgtggcatttgtctttagttgaagtatttctgttttgccgttgaaattattaattatgaagca---ttatgcatttctgtttataaat |
213 |
Q |
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| T |
43851303 |
aaaaagctgccatgtggcatttgtctttagttgaagtatttctgttttgccgttgaaattattaattatgaagcattattatgcatttctgtttataaat |
43851204 |
T |
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| Q |
214 |
gtatgcttgctaaagtttagtctttggtagtgttagttatactattgatgcttgtaatctggttctgtgtctggttggtttctgtctgtagttgatttct |
313 |
Q |
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| T |
43851203 |
gtatgcttgctaaagtttagtctttggtagtgttagttatactattgatgcttgtaatctggttctg---------------tgtctgtagttgatttct |
43851119 |
T |
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| Q |
314 |
ctaaagaaaagggaagagtaaccatttactacc |
346 |
Q |
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| T |
43851118 |
ctgaagaaaagggaagagtaaccatttactacc |
43851086 |
T |
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