View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_66 (Length: 344)
Name: NF17063_low_66
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 43194648 - 43194326
Alignment:
| Q |
16 |
agctatcatgtaaattaaaagaaacacgacaattgaaatattgattaattttcacttaatttacttttgcatgattatacttgcaattgaagtattaatt |
115 |
Q |
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| T |
43194648 |
agctatcatgtaaattaaaagaaacacgacagttgaaatattgattaattttcacttaatttacttttgcatgattacacttgcaattgaagtattaatt |
43194549 |
T |
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| Q |
116 |
agattttgattatttgagtaattaatt-------atatgactacacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgata |
208 |
Q |
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| T |
43194548 |
agattttgattgtttgagtaattaattcattgatatatgactacacttacgattgcaacggagtccgcggcagcgatggcaaggatatcagcacatgata |
43194449 |
T |
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| Q |
209 |
caacgccaggacatacattctctacagctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagt |
308 |
Q |
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| T |
43194448 |
caacgccaggacatacattctctacggctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttctattcggatttgcgtttttctctccagt |
43194349 |
T |
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| Q |
309 |
aaagtttgatgtgtcatctagta |
331 |
Q |
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| T |
43194348 |
aaagtttgatgtgtcatctagta |
43194326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 153 - 331
Target Start/End: Complemental strand, 43189050 - 43188872
Alignment:
| Q |
153 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
252 |
Q |
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| T |
43189050 |
acttacaattgcaacggagtctgtggcagcaatggcaaggatatcagcacatgatacaactccggggcatacgttctctaccgccgtctttatgttgtca |
43188951 |
T |
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| Q |
253 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatctagta |
331 |
Q |
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| T |
43188950 |
atgacatcgaatcctcgaacagagttcttattcgggagtgcgttcttctctccggtaaagtttgatgtgtcatctagta |
43188872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 152 - 328
Target Start/End: Complemental strand, 43180222 - 43180046
Alignment:
| Q |
152 |
cacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtc |
251 |
Q |
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| T |
43180222 |
cacttacaattgcaacagagtctgcggcagcaatggctaggatatcagcacatgatacaactccggggcatacgttctctacggctgtctttatgttgtc |
43180123 |
T |
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| Q |
252 |
aatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctctccagtaaagtttgatgtgtcatcta |
328 |
Q |
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| T |
43180122 |
gatgacatcaaatccacgagcggagtttctatttggatttgcattcttctcaccggtaaagcttgatgtgtcatcta |
43180046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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