View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_68 (Length: 341)
Name: NF17063_low_68
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_68 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 97 - 341
Target Start/End: Original strand, 31406263 - 31406507
Alignment:
| Q |
97 |
tgggaggattgggggaattctgtccccttaatagtattcccttttcattaaaaaacaatcataaatattagtggaggagaaagaaatgcaaggagttggc |
196 |
Q |
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| T |
31406263 |
tgggaggattgggggaattctgtccccttaatagtattcccttttcattaaaaaacaatcataaatattagtggaggagaaagaaatgcaaggagttggc |
31406362 |
T |
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| Q |
197 |
aaacacattcattcatattaatgacaaaaaagctcatagagagtcacatcaacctgcccataatagtgactaacaaacaacaaagacaaagttttatttc |
296 |
Q |
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| T |
31406363 |
aaacacattcattcatattaatgacaaaaaagctcatacagagtcacatcaacctgcccataatcactactaacaaacaacaaagacaaagttttatttc |
31406462 |
T |
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| Q |
297 |
tggctactagcacttcgatactattaactaaatagttaatatggt |
341 |
Q |
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| T |
31406463 |
tggttactagcacttcgatactattaactaaatagttaatatggt |
31406507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 31405803 - 31405891
Alignment:
| Q |
11 |
cacagaccaaatgtgaaggccttgatcaagtgctagtatagaggaaaatagtaggaaaccctatctaagatgcagaaatatccagttgg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31405803 |
cacagaccaaatgtgaaggccttgatcaagtgctagtatagaggaaaatagtaggaaaccctatctaagatgcagaaatatccagttgg |
31405891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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