View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_71 (Length: 320)
Name: NF17063_low_71
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 43850778 - 43851077
Alignment:
| Q |
1 |
taatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgct |
100 |
Q |
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| T |
43850778 |
taatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaatggttttgct |
43850877 |
T |
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| Q |
101 |
ccaaagccaatccataaacgttagaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaattcacaaaccacataa |
200 |
Q |
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| T |
43850878 |
ccaaagccaatccataaacgttagaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaaatcacaaaccacataa |
43850977 |
T |
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| Q |
201 |
caagctattatttacattcaagttcaatcgaagaactttaagacatagatcaccgtacaaactgcaggagatccgtaaatcataaaggttaacctactca |
300 |
Q |
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| T |
43850978 |
caagctattatttacattcaagttcaatcgaagaacgctaagacatagatcaccgtacaaactccaggagattcataaatcataaaggttaacctactca |
43851077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 24012410 - 24012500
Alignment:
| Q |
1 |
taatgcttgttcttctgtcatctcagttgcacagctccacttggctccttttatagtgtcctgctgcaaggtaacaaatatatcagaaaat |
91 |
Q |
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| T |
24012410 |
taatgcttgttcctcggtcatctcagctgcgccactccacttggcaccttttatagagtcttgctgcaaggcaacaaatacatcagaaaat |
24012500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 287
Target Start/End: Original strand, 24012625 - 24012783
Alignment:
| Q |
124 |
gaataataaaatctagaccctgtgtgcatgcgcgcgcatgcccatcactctttaatttcaattcacaaaccacataacaagctattat-ttacattcaag |
222 |
Q |
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| T |
24012625 |
gaataataaaatctagaccctgtgtacattc------atactcatcactcttcaatctcaaaacgcaaaccacagaacaagctgtaaaattacattcaag |
24012718 |
T |
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| Q |
223 |
ttcaatcgaagaactttaagacatagatcaccgtacaaactgcaggagatccgtaaatcataaag |
287 |
Q |
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||||||| | ||||| ||| |||||||| ||| |||||||| || |||||| |||||||||||| |
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| T |
24012719 |
ttcaatctatgaactctaaaacatagatgaccatacaaactccaagagatcgataaatcataaag |
24012783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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