View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_73 (Length: 306)

Name: NF17063_low_73
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_73
NF17063_low_73
[»] chr1 (29 HSPs)
chr1 (122-295)||(47533150-47533323)
chr1 (4-146)||(17244285-17244424)
chr1 (4-142)||(52759473-52759608)
chr1 (4-146)||(7111344-7111483)
chr1 (37-146)||(21203154-21203260)
chr1 (37-146)||(45228418-45228524)
chr1 (4-146)||(52761468-52761604)
chr1 (45-139)||(51468490-51468581)
chr1 (37-114)||(51693290-51693367)
chr1 (38-133)||(47533736-47533828)
chr1 (40-146)||(38235019-38235122)
chr1 (1-93)||(1823215-1823307)
chr1 (37-99)||(5488780-5488842)
chr1 (1-95)||(5488608-5488702)
chr1 (4-114)||(7110336-7110446)
chr1 (1-146)||(45229475-45229614)
chr1 (44-146)||(51468770-51468869)
chr1 (4-95)||(50484913-50485004)
chr1 (37-92)||(40187745-40187800)
chr1 (40-92)||(18819408-18819460)
chr1 (7-99)||(1822022-1822114)
chr1 (40-103)||(52086771-52086834)
chr1 (37-100)||(52087686-52087749)
chr1 (37-146)||(18820638-18820750)
chr1 (1-88)||(47533064-47533150)
chr1 (37-103)||(50483654-50483719)
chr1 (54-132)||(49619702-49619779)
chr1 (73-146)||(17245552-17245622)
chr1 (54-134)||(40722915-40722994)
[»] chr3 (48 HSPs)
chr3 (4-143)||(31937145-31937284)
chr3 (37-146)||(55209924-55210033)
chr3 (38-141)||(52522070-52522170)
chr3 (4-146)||(28776558-28776697)
chr3 (4-146)||(47431059-47431195)
chr3 (4-146)||(37610632-37610771)
chr3 (1-114)||(17740937-17741050)
chr3 (1-114)||(19042257-19042370)
chr3 (4-114)||(28777585-28777695)
chr3 (40-146)||(35758150-35758252)
chr3 (37-146)||(11348341-11348446)
chr3 (38-143)||(35759103-35759205)
chr3 (4-103)||(5689829-5689928)
chr3 (54-146)||(50879847-50879936)
chr3 (4-132)||(2233188-2233313)
chr3 (37-114)||(43393951-43394028)
chr3 (38-146)||(46903496-46903598)
chr3 (54-146)||(43392766-43392855)
chr3 (4-98)||(53180718-53180812)
chr3 (1-118)||(21729082-21729199)
chr3 (1-132)||(37609428-37609556)
chr3 (37-95)||(54354308-54354366)
chr3 (4-117)||(11346922-11347035)
chr3 (38-117)||(47429766-47429845)
chr3 (40-114)||(17116347-17116421)
chr3 (58-141)||(23072203-23072283)
chr3 (43-134)||(47917494-47917582)
chr3 (37-93)||(5691014-5691070)
chr3 (54-114)||(46902491-46902551)
chr3 (6-114)||(23073272-23073380)
chr3 (37-95)||(31938224-31938282)
chr3 (58-115)||(55210805-55210862)
chr3 (38-136)||(2232746-2232840)
chr3 (1-93)||(17742211-17742304)
chr3 (1-93)||(19043531-19043624)
chr3 (44-117)||(50881011-50881084)
chr3 (40-117)||(53764896-53764972)
chr3 (54-114)||(33111743-33111803)
chr3 (1-101)||(21728017-21728117)
chr3 (37-92)||(54353166-54353221)
chr3 (37-103)||(10979084-10979150)
chr3 (57-103)||(53101685-53101731)
chr3 (91-143)||(17117300-17117352)
chr3 (73-147)||(23091924-23091995)
chr3 (40-95)||(10978151-10978206)
chr3 (38-117)||(15290385-15290464)
chr3 (37-146)||(24376318-24376422)
chr3 (58-98)||(27749251-27749291)
[»] chr5 (21 HSPs)
chr5 (1-143)||(13278100-13278242)
chr5 (40-146)||(12372460-12372563)
chr5 (37-146)||(18654440-18654549)
chr5 (4-146)||(4031931-4032072)
chr5 (4-134)||(19229954-19230081)
chr5 (4-114)||(19228948-19229058)
chr5 (57-143)||(6803497-6803580)
chr5 (4-116)||(39350541-39350653)
chr5 (54-139)||(39164214-39164295)
chr5 (37-114)||(4032923-4033000)
chr5 (38-114)||(12373615-12373691)
chr5 (4-92)||(9083216-9083304)
chr5 (39-114)||(39349625-39349700)
chr5 (4-96)||(9082089-9082181)
chr5 (84-146)||(6802406-6802464)
chr5 (37-134)||(14356569-14356664)
chr5 (37-133)||(33362450-33362545)
chr5 (75-134)||(30673496-30673554)
chr5 (75-134)||(30674712-30674770)
chr5 (55-134)||(30916000-30916078)
chr5 (38-94)||(42962162-42962218)
[»] chr8 (25 HSPs)
chr8 (1-146)||(30640904-30641046)
chr8 (1-146)||(26364848-26364987)
chr8 (37-142)||(9244208-9244310)
chr8 (37-146)||(20309066-20309172)
chr8 (37-146)||(21095699-21095805)
chr8 (1-145)||(521970-522108)
chr8 (38-146)||(26366063-26366168)
chr8 (1-146)||(30644577-30644715)
chr8 (37-114)||(9245329-9245406)
chr8 (37-114)||(41636974-41637051)
chr8 (1-146)||(43584515-43584654)
chr8 (38-146)||(34643834-34643936)
chr8 (37-120)||(22012280-22012363)
chr8 (37-120)||(22013151-22013234)
chr8 (38-103)||(20309960-20310025)
chr8 (38-103)||(21096593-21096658)
chr8 (37-134)||(20066216-20066312)
chr8 (40-103)||(34642810-34642873)
chr8 (44-95)||(41638070-41638121)
chr8 (53-103)||(43133977-43134027)
chr8 (54-103)||(31203075-31203124)
chr8 (37-134)||(11080914-11081010)
chr8 (38-117)||(43585840-43585919)
chr8 (37-103)||(3714448-3714514)
chr8 (37-99)||(35462905-35462967)
[»] chr4 (28 HSPs)
chr4 (4-142)||(18091690-18091825)
chr4 (4-146)||(17356471-17356610)
chr4 (4-146)||(8815220-8815365)
chr4 (4-146)||(22621977-22622113)
chr4 (4-146)||(34095528-34095667)
chr4 (4-134)||(38032301-38032428)
chr4 (1-120)||(23757862-23757981)
chr4 (4-143)||(22623018-22623151)
chr4 (1-115)||(35927013-35927127)
chr4 (1-132)||(35925798-35925926)
chr4 (4-120)||(7261435-7261551)
chr4 (55-146)||(56234890-56234978)
chr4 (38-117)||(8814278-8814358)
chr4 (38-114)||(38031312-38031388)
chr4 (38-134)||(10804076-10804169)
chr4 (37-146)||(10803032-10803138)
chr4 (42-143)||(36074666-36074764)
chr4 (37-114)||(48501222-48501299)
chr4 (4-117)||(48499474-48499586)
chr4 (37-117)||(5433305-5433382)
chr4 (1-97)||(17357778-17357874)
chr4 (54-113)||(48081466-48081525)
chr4 (37-103)||(48081289-48081355)
chr4 (64-132)||(56233878-56233943)
chr4 (37-146)||(34122691-34122796)
chr4 (37-134)||(37642419-37642518)
chr4 (37-143)||(49923638-49923743)
chr4 (37-103)||(48462912-48462978)
[»] chr7 (43 HSPs)
chr7 (4-146)||(9392678-9392823)
chr7 (4-146)||(43113784-43113923)
chr7 (1-147)||(43961040-43961180)
chr7 (4-147)||(18788428-18788568)
chr7 (38-146)||(32518556-32518662)
chr7 (37-142)||(29186807-29186909)
chr7 (4-146)||(45399879-45400018)
chr7 (7-146)||(12630677-12630813)
chr7 (4-146)||(18787258-18787397)
chr7 (4-114)||(29187928-29188038)
chr7 (4-121)||(44417567-44417684)
chr7 (1-114)||(48793414-48793527)
chr7 (6-132)||(13597255-13597378)
chr7 (37-146)||(37237097-37237203)
chr7 (55-146)||(44231727-44231818)
chr7 (37-114)||(19217770-19217847)
chr7 (4-114)||(44748461-44748571)
chr7 (38-118)||(7011778-7011858)
chr7 (38-118)||(7027136-7027216)
chr7 (1-128)||(43962456-43962580)
chr7 (6-132)||(9391631-9391754)
chr7 (40-118)||(27072548-27072626)
chr7 (40-118)||(27205687-27205765)
chr7 (37-134)||(26005494-26005588)
chr7 (54-146)||(37235944-37236033)
chr7 (1-103)||(48792550-48792652)
chr7 (54-146)||(9357665-9357754)
chr7 (43-117)||(13599152-13599226)
chr7 (38-146)||(43114956-43115061)
chr7 (37-92)||(44230570-44230625)
chr7 (40-114)||(44420421-44420494)
chr7 (37-99)||(44746869-44746931)
chr7 (37-103)||(3538482-3538548)
chr7 (37-99)||(19218897-19218959)
chr7 (37-133)||(22794206-22794300)
chr7 (38-94)||(47536771-47536827)
chr7 (61-138)||(36395975-36396051)
chr7 (54-117)||(45398683-45398746)
chr7 (4-103)||(13750545-13750644)
chr7 (37-103)||(32519658-32519724)
chr7 (37-102)||(29409151-29409216)
chr7 (7-100)||(13749116-13749208)
chr7 (71-103)||(45689023-45689055)
[»] scaffold0878 (2 HSPs)
scaffold0878 (38-146)||(2893-3000)
scaffold0878 (57-146)||(1931-2017)
[»] scaffold0026 (1 HSPs)
scaffold0026 (54-146)||(104411-104500)
[»] chr6 (19 HSPs)
chr6 (4-147)||(34996632-34996769)
chr6 (4-146)||(32348909-32349045)
chr6 (4-146)||(32712465-32712601)
chr6 (38-146)||(34995495-34995600)
chr6 (4-146)||(11801211-11801350)
chr6 (4-117)||(32347918-32348031)
chr6 (37-100)||(27719878-27719941)
chr6 (1-103)||(21094512-21094614)
chr6 (4-114)||(32713781-32713891)
chr6 (4-147)||(3000667-3000801)
chr6 (54-146)||(18574182-18574271)
chr6 (43-117)||(21095274-21095348)
chr6 (54-146)||(29477900-29477995)
chr6 (43-114)||(18573033-18573104)
chr6 (37-103)||(19383064-19383129)
chr6 (38-95)||(7628469-7628526)
chr6 (37-134)||(682403-682499)
chr6 (55-97)||(13561434-13561476)
chr6 (60-146)||(7629676-7629758)
[»] chr2 (14 HSPs)
chr2 (38-146)||(27892205-27892310)
chr2 (57-146)||(27891269-27891355)
chr2 (38-114)||(16602869-16602945)
chr2 (37-146)||(5033602-5033707)
chr2 (1-103)||(38242990-38243089)
chr2 (4-114)||(38243853-38243963)
chr2 (37-103)||(5034744-5034810)
chr2 (54-146)||(16604078-16604167)
chr2 (37-133)||(12365902-12365996)
chr2 (38-95)||(44801016-44801073)
chr2 (4-92)||(23833077-23833165)
chr2 (54-131)||(12364345-12364420)
chr2 (109-146)||(26388416-26388453)
chr2 (38-94)||(370906-370962)
[»] scaffold0349 (1 HSPs)
scaffold0349 (37-100)||(9300-9363)
[»] scaffold1425 (2 HSPs)
scaffold1425 (37-134)||(277-373)
scaffold1425 (38-114)||(1499-1575)
[»] scaffold0141 (2 HSPs)
scaffold0141 (38-95)||(31177-31234)
scaffold0141 (38-95)||(35202-35259)
[»] scaffold0049 (2 HSPs)
scaffold0049 (38-95)||(83578-83635)
scaffold0049 (38-95)||(79553-79610)
[»] scaffold0018 (1 HSPs)
scaffold0018 (43-103)||(25253-25313)
[»] scaffold0041 (1 HSPs)
scaffold0041 (74-134)||(1006-1065)
[»] scaffold0081 (1 HSPs)
scaffold0081 (55-99)||(42923-42967)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 122 - 295
Target Start/End: Original strand, 47533150 - 47533323
Alignment:
Q  122 ctaatcttcatctacattcatcctttcaaacacatacccataaacacatacccacaatttttcagatcttaccttgaaagcagtgaattaatttccttag 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47533150 ctaatcttcatctacattcatcctttcaaacacataccaataaacacatacccacaatttttcagatcttaccttgaaagcagtgaattaatttccttag 47533249  T
Q  222 ttccagatctgcacctttgcttatatccggaaatgggtttataaattcaacaacttcatccaatctgtaccttt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47533250 ttccagatctgcacctttgcttatatccggaaatgggtttataaattcaacaacttcatccaatctgtaccttt 47533323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 17244285 - 17244424
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||| ||       |||||||||||||||  |||||||||||||||||||| ||||||||| | |||||||||||||||      
T  17244285 tccaattttgataattttaatctcctaaaaaaagagaccgttggattacggaggtctatcagattttataatgtatcaccgatacctaatttatttac-- 17244382  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     ||||||||||||||||||| ||||||||||||||||||||||    
T  17244383 -tttcttcttcttcttccctcatcttcatctacattcatcctt 17244424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 52759473 - 52759608
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||||||||  |       |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  52759473 tccaattttgataattttaatctcttaaaaaatgagaccgttgaattacagaggtctatcagattttatagtgtatcaccaacacctaatttatttac-- 52759570  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcat 142  Q
     ||||||||||||||||||| |||||||||||| |||||    
T  52759571 -tttcttcttcttcttccctcatcttcatctaccttcat 52759608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 7111483 - 7111344
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7111483 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttactt 7111384  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
      ||||||||   ||||| | |||||||||| |||||||||||    
T  7111383 tcttcttctt---cttccatcatcttcatctccattcatcctt 7111344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 21203154 - 21203260
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||||||||  || ||||||||||||    
T  21203154 gagaccgttggattacaaaggtctatcagattttatagtgtatcatcaacacctaatttatttac---tttcttattcttcttttctcatcttcatctac 21203250  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  21203251 attcatcctt 21203260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 45228418 - 45228524
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||||||||||||||  ||| ||||||| ||||||||||||||||| ||| | ||||||||||||   ||||||||||||||||||| ||||||||||||    
T  45228418 gagaccgttggattacggagatctatcaaattttatagtgtatcacaaacgcttaatttatttac---tttcttcttcttcttccctcatcttcatctac 45228514  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  45228515 attcatcctt 45228524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 52761604 - 52761468
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||     
T  52761604 tccaattttgataattttaatcccctgaaaaaagagaccgttggattgcggaggtctatcagattttatagtgtatcaccaacacctaatttatttact- 52761506  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
         |||| |||||||| | |||||||||| |||||||||||    
T  52761505 -----ttctccttcttccatcatcttcatcttcattcatcctt 52761468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 51468490 - 51468581
Alignment:
Q  45 tggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacatt 139  Q
    |||||||  |||||||||||||||||||||||||||||||||||| |||||||||||   ||| ||||||||||||||| |||||||||||||||    
T  51468490 tggattacggaggtctatcagattttatagtgtatcaccaacacccaatttatttac---ttttttcttcttcttccctcatcttcatctacatt 51468581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 51693290 - 51693367
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  51693290 gagaccgttggattacggaggtctatcggattttatagtgtatcaccaacacctaatttatttactttcttcttcttc 51693367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 47533828 - 47533736
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatc 133  Q
    ||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||| | |||||||||    
T  47533828 agaccgttaaattagagagatctatcagattttatagtgtatcaccaacacctaatttatttac---tttcttcatcttcttccatcatcttcatc 47533736  T

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Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 38235122 - 38235019
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacatt 139  Q
    ||||||||||||   | |||||| |||||||| |||||||||||||||||||||||||||||||  ||||||||   ||||||| ||||||||||||| |    
T  38235122 accgttggattacgaatgtctataagattttacagtgtatcaccaacacctaatttatttactttcttcttctt---cttccctcatcttcatctacact 38235026  T
Q  140 catcctt 146  Q
    |||||||    
T  38235025 catcctt 38235019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1823307 - 1823215
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaat 93  Q
    |||||||||||||||||||||||||||||        | ||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  1823307 tgatccaattttgataattttaatcttctaaaaagataaaccgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaat 1823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 5488842 - 5488780
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt 99  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  5488842 gagaccgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaatttattt 5488780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5488608 - 5488702
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    |||||||||||||||||||||||||   |       |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  5488608 tgatccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacgtaattt 5488702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 7110336 - 7110446
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||| |||||||||   |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  7110336 tccaattttgataattttaatcccctaaaaaaagagatcgttggattgcggaggtctatcagattttatagtgtatcatcaacgcctaatttatttactt 7110435  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  7110436 tcttcttcttc 7110446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 45229614 - 45229475
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| | |        |||  |||||||||  |||||||||||||||||||| || |||||||||||||||||||||||    
T  45229614 tgatccaattttgataattttaatcctataaaaaaaaagattgttggattacggaggtctatcagattttataatggatcaccaacacctaatttattta 45229515  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     |      ||||| ||||||| | ||||||||||||||||||||||    
T  45229514 gt------ttcttgttcttccttcatcttcatctacattcatcctt 45229475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 51468869 - 51468770
Alignment:
Q  44 ttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatc 143  Q
    ||||||||  ||| ||||| |||||||| |||||||||||||||||||||||||||||||  ||||||||   ||||| | ||||||||||||||| |||    
T  51468869 ttggattacggagatctattagattttacagtgtatcaccaacacctaatttatttactttcttcttctt---cttccatcatcttcatctacatttatc 51468773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 50485004 - 50484913
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||||||||||||  ||       |||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  50485004 tccaattttgataattttaatcccctaaaaaaagagaccattggattacataggtctatcagattttacagtgtatcaccaacacctaattt 50484913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 40187745 - 40187800
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaa 92  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  40187745 gagaccgttggattacggaggtctatcagattttatcgtgtatcaccaacacctaa 40187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 18819408 - 18819460
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaa 92  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  18819408 accgttggattacggaggtatatcagattttatagtgtatcaccaacacctaa 18819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 1822022 - 1822114
Alignment:
Q  7 aattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt 99  Q
    ||||||||||||||||||| | |       ||||||||||| |||   ||||||||| |||||||||||||||||  ||||||||||||||||    
T  1822022 aattttgataattttaatcctttaaaaaaagagaccgttgggttacgaaggtctatctgattttatagtgtatcattaacacctaatttattt 1822114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 52086771 - 52086834
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||   |||||||| | ||||||||||||||||||| |||||||||| |||||||    
T  52086771 accgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaatttttttactt 52086834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 52087749 - 52087686
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||| ||||  ||||||||||| ||||||  |||||||||||||| ||||||||||||    
T  52087749 gagaccgttgaattacggaggtctatcaaattttacggtgtatcaccaacatctaatttattta 52087686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 18820750 - 18820638
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttctt---cttccctaatcttcatc 133  Q
    |||| |||||||| |  ||||||||  |||||| |||||||||||| ||||||| ||| ||||||||  ||| |||||||   ||||||| |||||||||    
T  18820750 gagatcgttggataagtgaggtctactagatttgatagtgtatcactaacacctgattcatttactttcttcctcttcttcttcttccctcatcttcatc 18820651  T
Q  134 tacattcatcctt 146  Q
    | |||||| ||||    
T  18820650 ttcattcaacctt 18820638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 47533064 - 47533150
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacac 88  Q
    |||| ||||||||||||||||||||||||        |||| |||| ||||| || ||||||||||||||||| ||||||||||||||    
T  47533064 tgattcaattttgataattttaatcttctaaaaaac-agactgttgaattatggaagtctatcagattttataatgtatcaccaacac 47533150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 50483654 - 50483719
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||| |||||||||  || ||||| |||||||||| |||||| |||||||||||||||||||||||    
T  50483654 gagactgttggattacggaagtcta-cagattttatcgtgtataaccaacacctaatttatttactt 50483719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 49619779 - 49619702
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaattta-tttacttatttcttcttcttcttccctaatcttcat 132  Q
    |||||||||||||||| |  ||||||||||||||||| ||||| ||||||  ||||||| |||||||| || ||||||||    
T  49619779 gaggtctatcagatttaactgtgtatcaccaacacctgatttattttact--tttcttcatcttcttctctcatcttcat 49619702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 17245622 - 17245552
Alignment:
Q  73 agtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||| | ||||| |||||||||||||||   |||||||| |||||| | |||||||||| |||||||||||    
T  17245622 agtgtatgatcaacatctaatttatttactt---tcttcttcatcttccatcatcttcatcttcattcatcctt 17245552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 40722994 - 40722915
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatt-tacttatttcttcttcttcttccctaatcttcatct 134  Q
    |||||| ||||||||| |  |||||||| |||||||||||||||| ||||  ||||||| | ||||||||| ||||||||||    
T  40722994 gaggtccatcagatttaacggtgtatcatcaacacctaatttattctact--tttcttcattttcttccctcatcttcatct 40722915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 31937145 - 31937284
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31937145 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttttttactt 31937244  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatc 143  Q
      |||||||||||||||||| |||||||||||||||||||    
T  31937245 tcttcttcttcttcttccctcatcttcatctacattcatc 31937284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 55209924 - 55210033
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||||| ||||||||  ||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  55209924 gagaccattggattacggaggtctatcagaatttatagtgtattaccaacacctaatttatttactttattcttcttcttcttccctcatcttcatctac 55210023  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  55210024 attcatcctt 55210033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 52522070 - 52522170
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    |||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||    
T  52522070 agacagttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatttac---tttcttcttcttcttccctcatcttcatctaca 52522166  T
Q  138 ttca 141  Q
    ||||    
T  52522167 ttca 52522170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 28776558 - 28776697
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||      
T  28776558 tccaattttgataattttaatcccctaaaaacagagaccgttggattacggaggtctatcagattttataatgtatcatcaacacctaatttatttac-- 28776655  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     ||||||||||||||||| | |||||||||| |||||||||||    
T  28776656 -tttcttcttcttcttccatcatcttcatctccattcatcctt 28776697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 47431195 - 47431059
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||     
T  47431195 tccaattttgataattttaatcccctaaaaaaagagaccgttggattatggaggtctattagattttatagtgtatcacccacacctaatttatttact- 47431097  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
         ||||||||||||| | ||||||||||||||||||||||    
T  47431096 -----ttcttcttcttccatcatcttcatctacattcatcctt 47431059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 37610771 - 37610632
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||        ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37610771 tccaattttgataattttaatcccctaaaaaaaaagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 37610672  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
      ||||||||   ||||||| |||||| ||| |||||||||||    
T  37610671 tcttcttctt---cttccctcatcttcgtcttcattcatcctt 37610632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 17740937 - 17741050
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| | |       |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  17740937 tgatccaattttgataattttaatcctttaaaaatagagaccgtcggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 17741036  T
Q  101 cttatttcttcttc 114  Q
    |||  |||||||||    
T  17741037 ctttcttcttcttc 17741050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 19042257 - 19042370
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| | |       |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  19042257 tgatccaattttgataattttaatcctttaaaaatagagaccgtcggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 19042356  T
Q  101 cttatttcttcttc 114  Q
    |||  |||||||||    
T  19042357 ctttcttcttcttc 19042370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 28777695 - 28777585
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28777695 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttactt 28777596  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  28777595 tcttcttcttc 28777585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 35758150 - 35758252
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacatt 139  Q
    ||||||||||||   | ||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||  ||||||||||||||    
T  35758150 accgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaatttatttac---tttcttcttcttcttccct-ctcttcatctacatt 35758245  T
Q  140 catcctt 146  Q
    |||||||    
T  35758246 catcctt 35758252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 11348446 - 11348341
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||||||||| ||||  |||||||||||||||||||||| |||||||| ||||||||| ||||||||   ||||||||||||||||| |||||| |||||    
T  11348446 gagaccgttgaattacggaggtctatcagattttatagtatatcacca-cacctaattaatttactt---tcttcttcttcttcccttatcttcctctac 11348351  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  11348350 attcatcctt 11348341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 35759205 - 35759103
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    ||||||||||||||   | ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||   ||||||| |||||||||||||    
T  35759205 agaccgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaatttatttactttcttcttctt---cttccctcatcttcatctaca 35759109  T
Q  138 ttcatc 143  Q
    ||||||    
T  35759108 ttcatc 35759103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 5689829 - 5689928
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||||||| | |       |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5689829 tccaattttgataattttaatcctttaaaacaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacttaatttatttactt 5689928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 50879847 - 50879936
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |   ||||||||||||||| ||| ||||||||||| ||||||||||    
T  50879847 gaggtctatcagattttatagtgtatcaccaacacctaatttgtttcc---tttcttcttcttctttcctcatcttcatctatattcatcctt 50879936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 2233313 - 2233188
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||||||| |||       |||| ||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  2233313 tccaattttgataattttaatcctctaaaaaaagagatcgttggattatggagatctataagattttatagcgtatcaccaacacctaatttaattactt 2233214  T
Q  104 atttcttcttcttcttccctaatcttcat 132  Q
       ||||||||||||||| | ||||||||    
T  2233213 ---tcttcttcttcttccatcatcttcat 2233188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 43394028 - 43393951
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  43394028 gagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttatttactttcttcttcttc 43393951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 46903598 - 46903496
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||      ||||||||||||| | || ||||||| ||    
T  46903598 agaccgttggattacggaggtctattagattttatagtgtatcaccaacacctaatttatttact------ttcttcttcttccatcattttcatcttca 46903505  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  46903504 ttcatcctt 46903496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 43392766 - 43392855
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||||||||||||||| |||||||||| |||||| ||||    
T  43392766 gaggtctatcagattttatagtgtaccaccaacaccaaatttattta---ttttcttcttcttcttccctcatcttcatcttcattcaacctt 43392855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 53180812 - 53180718
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatt 98  Q
    ||||||||| |||||||||||| |||       |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  53180812 tccaattttaataattttaatcctctaaaaaaggagaccgttggattacggaggtctatcagattgtatagtgtatcaccaacacctaatttatt 53180718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21729199 - 21729082
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||| |||||||||||||||||||| |||       |||||| |||||||||  ||||||| || |||||||||||||||| ||||||||||||||||||    
T  21729199 tgattcaattttgataattttaatcctctaaaaaatgagaccattggattatgaaggtctaccatattttatagtgtatcatcaacacctaatttattta 21729100  T
Q  101 cttatttcttcttcttct 118  Q
    |||  ||| |||||||||    
T  21729099 ctttcttcatcttcttct 21729082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37609428 - 37609556
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||| ||||||||||||  ||       |||||||||||||||  ||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  37609428 tgatccaattttaataattttaatcccctaaaaaaagagaccgttggattagggaggtctataagatttaatagtgtctcatcaacacctaatttattta 37609527  T
Q  101 cttatttcttcttcttcttccctaatcttcat 132  Q
    |   ||||||||||||||||| | ||||||||    
T  37609528 c---tttcttcttcttcttccatcatcttcat 37609556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 54354366 - 54354308
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54354366 gagaccattggattatagaggtctatcagattttacagtgtatcaccaacacctaattt 54354308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 11346922 - 11347035
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||| |||||||||  ||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  11346922 tccaattttgataattttaatcccctgaaaagagagaccattggattatgaaggtctaccatattgtatagtgtatcaccaacacctaatttatttactt 11347021  T
Q  104 atttcttcttcttc 117  Q
      ||| ||||||||    
T  11347022 tcttcatcttcttc 11347035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 47429766 - 47429845
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    |||| |||||||||  ||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||| |||||    
T  47429766 agactgttggattacggaggtctattagattttatagtgtatcaccaacatctaatttatttactttcttcttcatcttc 47429845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 17116347 - 17116421
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||  |||||| |||||| ||||||||||||||||||||||||||||||| ||||  |||||||||    
T  17116347 accgttggattacggaggtccatcagagtttatagtgtatcaccaacacctaatttattcactttcttcttcttc 17116421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 23072203 - 23072283
Alignment:
Q  58 tctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattca 141  Q
    ||||||||||||||||||||| | ||||||||  ||||||||||   ||||||||||||||||||| |||||||||| ||||||    
T  23072203 tctatcagattttatagtgtaccgccaacaccagatttatttac---tttcttcttcttcttccctcatcttcatcttcattca 23072283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 47917582 - 47917494
Alignment:
Q  43 gttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatct 134  Q
    |||||||||  ||||| |||||||||||||||||||| ||||||||| |||||||||||||   || |||||||||||| | ||||||||||    
T  47917582 gttggattacggaggtttatcagattttatagtgtattaccaacaccgaatttatttactt---tcctcttcttcttccatcatcttcatct 47917494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 5691070 - 5691014
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaat 93  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  5691070 gagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaat 5691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 46902491 - 46902551
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||  |||||||||    
T  46902491 gaggtctatcagattttatagtgtatcactaacaccaaatttatttactttcttcttcttc 46902551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 23073380 - 23073272
Alignment:
Q  6 caattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttat 105  Q
    ||||||||||||||||||||  ||       |||||||||| ||||  ||||| ||||| ||||||  ||||||||||||||||||||||||||||||      
T  23073380 caattttgataattttaatcccctaaaaaaagagaccgttgaattacggaggtgtatcaaattttacggtgtatcaccaacacctaatttatttactttc 23073281  T
Q  106 ttcttcttc 114  Q
    |||||||||    
T  23073280 ttcttcttc 23073272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 31938282 - 31938224
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    |||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||    
T  31938282 gagaccgttggattacgaaggtctataagattttatagtgtatcaccaacacctaattt 31938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 55210862 - 55210805
Alignment:
Q  58 tctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttct 115  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||    
T  55210862 tctatcagattttataatgtatcaccaacacataatttatttactttcttcttcttct 55210805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 2232746 - 2232840
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    ||||| ||||||||  ||||||||| ||||||||  |||||||| |||||||||||||||||||   |||||| |||||||||||  ||||||||||||    
T  2232746 agaccattggattacggaggtctatgagattttacggtgtatcagcaacacctaatttatttac---tttctttttcttcttccc-catcttcatctac 2232840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17742304 - 17742211
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattt-tatagtgtatcaccaacacctaat 93  Q
    |||||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||| || ||||||||| |||||||||||    
T  17742304 tgatccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagatttatacagtgtatcaacaacacctaat 17742211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19043624 - 19043531
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattt-tatagtgtatcaccaacacctaat 93  Q
    |||||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||| || ||||||||| |||||||||||    
T  19043624 tgatccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagatttatacagtgtatcaacaacacctaat 19043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 50881084 - 50881011
Alignment:
Q  44 ttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    |||||||||  ||||||| || ||||||||||||| ||||||||||||||||||||| ||  ||| ||||||||    
T  50881084 ttggattatgaaggtctaccatattttatagtgtaccaccaacacctaatttatttattttcttcatcttcttc 50881011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 53764896 - 53764972
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||||||||| |||||| |||||||  ||| ||||||||    
T  53764896 accgttgaattacggaggtctatcagattttatggtgtatcaccaacacttaattt-tttactttattcatcttcttc 53764972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 33111803 - 33111743
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||| | ||||||||||||||| || |||||||||||||||||||  |||||||||    
T  33111803 gaggtctataaaattttatagtgtatctcccacacctaatttatttactttcttcttcttc 33111743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 21728017 - 21728117
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||| ||||||||||||||||||||| ||        |||| ||| |||||   |||||||||  |||||||| ||||||||||||||||||||||||||    
T  21728017 tgattcaattttgataattttaatctcctaaaaaagtagactgttagattacgaaggtctatctcattttataatgtatcaccaacacctaatttattta 21728116  T
Q  101 c 101  Q
    |    
T  21728117 c 21728117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 54353166 - 54353221
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaa 92  Q
    |||||||||||||||   |||||||||||||||||| ||||||||| |||||||||    
T  54353166 gagaccgttggattacgaaggtctatcagattttatcgtgtatcactaacacctaa 54353221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 10979150 - 10979084
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||| ||||||||  ||||| ||||| ||||||  |||||||||||||| |||||||||||||||    
T  10979150 gagaccattggattacggaggtttatcaaattttacggtgtatcaccaacatctaatttatttactt 10979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 53101685 - 53101731
Alignment:
Q  57 gtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  53101685 gtctaccagatcttatagtgtatcaccaacacttaatttatttactt 53101731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 17117352 - 17117300
Alignment:
Q  91 aatttatttacttatttcttcttcttcttccctaatcttcatctacattcatc 143  Q
    |||||||||||||  |||||||||||||||||| ||||||||| | |||||||    
T  17117352 aatttatttactttcttcttcttcttcttccctcatcttcatcaatattcatc 17117300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 23091924 - 23091995
Alignment:
Q  73 agtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatccttt 147  Q
    |||||||||||||||||||||||||| || |  | |||||||||||   || ||||||||| |||||||||||||    
T  23091924 agtgtatcaccaacacctaatttattaaccttctccttcttcttct---ctcatcttcatccacattcatccttt 23091995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 10978151 - 10978206
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||   |||||||| | ||||||||||||||||||| ||||||||||    
T  10978151 accgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaattt 10978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 15290464 - 15290385
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    ||||| ||| |||||  ||||||| || |||||||||||||||| ||| |||||||||||||| ||  ||| ||||||||    
T  15290464 agaccattgaattatgaaggtctaccatattttatagtgtatcatcaatacctaatttatttattttcttcatcttcttc 15290385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 24376422 - 24376318
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||| |||||||| | ||||||||| ||||| ||||| |||||||||||||||| | |||||||   |||||||| | ||||||||  |||||||||  |    
T  24376422 gagatcgttggataagagaggtctaccagatcttataatgtatcaccaacacctga-ttattta---atttcttcatgttcttccc-catcttcatcatc 24376328  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  24376327 attcatcctt 24376318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 27749251 - 27749291
Alignment:
Q  58 tctatcagattttatagtgtatcaccaacacctaatttatt 98  Q
    |||||||||| |||||||||||||||||||| | |||||||    
T  27749251 tctatcagatcttatagtgtatcaccaacacttgatttatt 27749291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13278242 - 13278100
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||||||||||||||||   |       |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  13278242 tgatccaattttgataattttaatcccatagaaaaagagaccgttggattagggaggtctatcagattttatagtgtatcaccaacacctaatttattta 13278143  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatc 143  Q
    |||  |||||||||||||||||| |||||||||| ||||||||    
T  13278142 ctttattcttcttcttcttccctcatcttcatctccattcatc 13278100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 12372460 - 12372563
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacatt 139  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||    
T  12372460 accgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttac---tttcttcttcttcttccctcatcttcatctacatt 12372556  T
Q  140 catcctt 146  Q
    |||||||    
T  12372557 catcctt 12372563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 18654440 - 18654549
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||  || | ||||||||||||||||||| |||||||||| |    
T  18654440 gagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttatcaacatttttcttcttcttcttccctcatcttcatcttc 18654539  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  18654540 attcatcctt 18654549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 4031931 - 4032072
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||| ||||  || ||||| ||||||||||||||||||||||||||||||||||  || ||    
T  4031931 tccaattttgataattttaatccactaaaaaaagagaccgttgaattacggaagtctaccagattttatagtgtatcaccaacacctaattta--tattt 4032028  T
Q  104 a-tttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    | ||||||||||||||||| | ||||||||||||||||||||||    
T  4032029 actttcttcttcttcttccttcatcttcatctacattcatcctt 4032072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 19230081 - 19229954
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  ||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  19230081 tccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcatcaacacttaatttatttactt 19229982  T
Q  104 atttcttcttcttcttccctaatcttcatct 134  Q
       ||||||||||||||| | ||||||||||    
T  19229981 ---tcttcttcttcttccatcatcttcatct 19229954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 19228948 - 19229058
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  19228948 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctattagattttatagtgtatcatcaacacctaatttatttactt 19229047  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  19229048 tcttcttcttc 19229058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 6803580 - 6803497
Alignment:
Q  57 gtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatc 143  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||   ||||||| |||||||||||||||||||    
T  6803580 gtctatcagattttatagtgtatcaccaacatctaatttatttactttcttcttctt---cttccctcatcttcatctacattcatc 6803497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 39350653 - 39350541
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||| |||||||||||| |||       |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||| |||    
T  39350653 tccaatttttataattttaatcctctaaaaaaagagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttttttgctt 39350554  T
Q  104 atttcttcttctt 116  Q
      ||| |||||||    
T  39350553 tattcatcttctt 39350541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 39164214 - 39164295
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacatt 139  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||    || ||| |||||||||||||||    
T  39164214 gaggcctatcaaattttatagtgtatcaccaacacctaatttatttacttttttcttctt----tttcctcatcttcatctacatt 39164295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 4033000 - 4032923
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    |||||||||||||||  |||||||||||||||||||| |||||||  |||||||| |||||||||||  |||||||||    
T  4033000 gagaccgttggattacggaggtctatcagattttataatgtatcattaacacctagtttatttactttcttcttcttc 4032923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 12373691 - 12373615
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||||   | ||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||    
T  12373691 agaccgttggattacgaatgtctatcagattttacactgtatcaccaacacctaatttatttactttcttcttcttc 12373615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 9083304 - 9083216
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaa 92  Q
    ||||||||||||||||||||||  ||       |||||||||||||||   |||||||| |||||||||||||||||||||||||||||    
T  9083304 tccaattttgataattttaatcccctaaaaaaggagaccgttggattacgaaggtctataagattttatagtgtatcaccaacacctaa 9083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 39349625 - 39349700
Alignment:
Q  39 gaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||| |||||  ||||||||| ||||||||| ||| ||||||||||||||||||||||||||  |||||||||    
T  39349625 gaccgtttgattacggaggtctattagattttatcgtggatcaccaacacctaatttatttactttcttcttcttc 39349700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 9082089 - 9082181
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattta 96  Q
    ||||||||||||||||||||||  ||       ||||||||||||| |  || ||||||||||||||||||| |||| | |||||||||||||    
T  9082089 tccaattttgataattttaatcccctagaaaatgagaccgttggatcacggatgtctatcagattttatagtatatcgctaacacctaattta 9082181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 6802406 - 6802464
Alignment:
Q  84 aacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||||||   ||||||||||||||||||  ||||| ||||||||||||||||    
T  6802406 aacacctaatttatttac---tttcttcttcttcttccc-catctttatctacattcatcctt 6802464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 14356569 - 14356664
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatct 134  Q
    |||||| |||||| |  ||||||||||| || | || ||||||||||||||||| ||||||||  |  ||||||| ||||||| ||| ||||||||||    
T  14356569 gagaccattggatgaatgaggtctatcacatctaattgtgtatcaccaacacctgatttattt--tactttcttcatcttctttcctcatcttcatct 14356664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 33362545 - 33362450
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattta-tttacttatttcttcttcttcttccctaatcttcatc 133  Q
    |||||| |||||| |  |||||||||||||| | |  |||||||||||| |||| ||||| ||||||  ||||||| ||||||||||| |||||||||    
T  33362545 gagaccattggataaatgaggtctatcagatctaactgtgtatcaccaataccttatttattttact--tttcttcatcttcttccctcatcttcatc 33362450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 30673496 - 30673554
Alignment:
Q  75 tgtatcaccaacacctaatttattt-acttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||||||||||||||| |||  |||| || ||||||||||| ||||||||||    
T  30673496 tgtatcaccaacacctaatttatttcact--tttcatcatcttcttccctcatcttcatct 30673554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 30674770 - 30674712
Alignment:
Q  75 tgtatcaccaacacctaatttattt-acttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||||||||||||||| |||  || |||| ||||||||||| ||||||||||    
T  30674770 tgtatcaccaacacctaatttatttcact--ttccttcctcttcttccctcatcttcatct 30674712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 30916078 - 30916000
Alignment:
Q  55 aggtctatcagattttatagtgtatcaccaacacctaatttattt-acttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||| | |  |||||| |||||||||| |||||||| ||||  |||||| ||||||||||| ||||||||||    
T  30916078 aggtctatcagatctaactgtgtattaccaacacctgatttattttactt--ttcttcatcttcttccctcatcttcatct 30916000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 42962162 - 42962218
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatt 94  Q
    |||||||||||| |  ||||||||| |||| | || |||||||||||||||||||||    
T  42962162 agaccgttggataaaggaggtctataagatctaatggtgtatcaccaacacctaatt 42962218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 30640904 - 30641046
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||| ||||||||||||  ||       |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  30640904 tgatccaattttaataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaatttattta 30641003  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |   ||||||||||||||||||| ||||||||||||||||||||||    
T  30641004 c---tttcttcttcttcttcccttatcttcatctacattcatcctt 30641046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 26364848 - 26364987
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| |||       ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26364848 tgatccaattttgataattttaatcctctaaaaaaagagaccgttggattacagaggtctatcagattttataatgtatcaccaacacctaatttattta 26364947  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     |      ||||||||||||||| |||||||||||| |||||||||    
T  26364948 gt------ttcttcttcttccctcatcttcatctacgttcatcctt 26364987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 9244208 - 9244310
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||||| ||||||||||||    
T  9244208 gagaccgtaggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta---ttttcttctttttcttccctcatcttcatctac 9244304  T
Q  137 attcat 142  Q
    ||||||    
T  9244305 attcat 9244310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 20309066 - 20309172
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||| | |||||||||| |    
T  20309066 gagaccgttggatcactgaggtctatcagattttatagtgtatcaccaatacctaatttatttac---tttcttcttcttcttccatcatcttcatctcc 20309162  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  20309163 attcatcctt 20309172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 21095699 - 21095805
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||| | |||||||||| |    
T  21095699 gagaccgttggatcactgaggtctatcagattttatagtgtatcaccaatacctaatttatttac---tttcttcttcttcttccatcatcttcatctcc 21095795  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  21095796 attcatcctt 21095805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 522108 - 521970
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||| |||||||||||||||||||  ||       ||||| |||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  522108 tgatctaattttgataattttaatcccctagaaaaagagactgttggattacggaggtctatcaaattttatagtgtatcaccaacccctaatttattta 522009  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatcct 145  Q
    ||      ||||||||||||||| |||||||||||||||||||||    
T  522008 ct------ttcttcttcttccctcatcttcatctacattcatcct 521970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 26366168 - 26366063
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    |||||||| |||||  ||||||||| ||||||||||||||||||||||||| ||||||||||||||  ||||||||   |||||||||||||| ||||||    
T  26366168 agaccgttagattacggaggtctattagattttatagtgtatcaccaacacataatttatttactttcttcttctt---cttccctaatcttcttctaca 26366072  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  26366071 ttcatcctt 26366063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 30644715 - 30644577
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| |||       |||||||||||||||  ||||||||||| |||||||| || |||||||||||||||||||||||    
T  30644715 tgatccaattttgataattttaatcctctaaaaaa-gagaccgttggattacggaggtctatcaaattttataatggatcaccaacacctaatttattta 30644617  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     |      || |||||||||||| ||||||||||||||||||||||    
T  30644616 gt------tttttcttcttccctcatcttcatctacattcatcctt 30644577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 9245406 - 9245329
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  9245406 gagaccgttggattgctgaggtctatcagattttatagtgtatcaccaacacctaatttatttactttcttcttcttc 9245329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 41636974 - 41637051
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    |||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  41636974 gagaccgttggattacggaagtctatcagattttatcgtgtatcaccaacacctaatttatttactttcttcttcttc 41637051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 43584515 - 43584654
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||||| |       ||||||||||||||| | | ||||||||||||||||| |||||||||||   ||||||||||||    
T  43584515 tgatccaattttgataattttaatcttttaaaaaaagagaccgttggattacaaaagtctatcagattttataatgtatcaccaatgtctaatttattta 43584614  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||      ||||||||||||| | |||||||||| ||||| |||||    
T  43584615 ct------ttcttcttcttccatcatcttcatcttcattcgtcctt 43584654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 34643936 - 34643834
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    |||||||||||||   ||||||||||||||||||| | |||||||||||||||||||||||   |   |||||||||||||||||| |||||||||||||    
T  34643936 agaccgttggatt---gaggtctatcagattttatggcgtatcaccaacacctaatttatt---tggattcttcttcttcttccctcatcttcatctaca 34643843  T
Q  138 ttcatcctt 146  Q
    || ||||||    
T  34643842 ttaatcctt 34643834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 22012280 - 22012363
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttc 120  Q
    |||| |||||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||    
T  22012280 gagatcgttggataagtgaggtctaccagattttatagtgtatcaccaacacctgatttatttactttcttcttcttcttcttc 22012363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 22013234 - 22013151
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttc 120  Q
    |||| |||||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  22013234 gagatcgttggataagtgaggtctaccagattttatagtgtatcaccaacacctgatttatttactttcatcttcttcttcttc 22013151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 20310025 - 20309960
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  20310025 agaccgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaacttatttactt 20309960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 21096658 - 21096593
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||  |||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  21096658 agaccgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaacttatttactt 21096593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 20066216 - 20066312
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatt-tacttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||| | |||| || ||||||||| | |||||||||||||||||||||||||| ||||  ||||||| ||||||||||  ||||||||||    
T  20066216 gagaccgttggataaaagagatccatcagatttaacagtgtatcaccaacacctaatttattctact--tttcttcatcttcttcccacatcttcatct 20066312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 34642810 - 34642873
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||   |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  34642810 accgttggattgcggaggtctatcagattttatagtatatcaccaacatctaatttatttactt 34642873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 41638121 - 41638070
Alignment:
Q  44 ttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  41638121 ttggattacagaggtctatcatgttttatagtgtatcaccaacacctaattt 41638070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 43134027 - 43133977
Alignment:
Q  53 agaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  43134027 agaggtctaccagattttatagtgtatcaccaacacttgatttatttactt 43133977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 31203075 - 31203124
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  31203075 gaggtctatcaaattttataatgtatcaccaacacctaacttatttactt 31203124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 11081010 - 11080914
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattta-tttacttatttcttcttcttcttccctaatcttcatct 134  Q
    |||||| |||||| |  |||||||||||||| | |  ||||||||||||||||| ||||| ||||||  ||||||| ||||||||||| ||||||||||    
T  11081010 gagacctttggataaatgaggtctatcagatctaactgtgtatcaccaacacctgatttattttact--tttcttcatcttcttccctcatcttcatct 11080914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 43585919 - 43585840
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    ||||| |||||||||  ||||||| || |||||||||||||||| ||| |||||||||||||| ||  ||| ||||||||    
T  43585919 agaccattggattatgaaggtctaccatattttatagtgtatcatcaatacctaatttatttattttcttcatcttcttc 43585840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 3714514 - 3714448
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||| |||||||| |  ||| |||||||||| |||||||||||||||||||| | ||||||||||||    
T  3714514 gagatcgttggataagggagatctatcagatcttatagtgtatcaccaacacttgatttatttactt 3714448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 35462967 - 35462905
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt 99  Q
    |||| |||||||| |  |||||||||| ||| | | |||||||||||||||||||||||||||    
T  35462967 gagatcgttggataaatgaggtctatctgatctaacagtgtatcaccaacacctaatttattt 35462905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 18091690 - 18091825
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||||||||  |       |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  18091690 tccaattttgataattttaatctcttaaaaaatgagaccgttgaattacagaggtctatcagattttatagtgtatcaccaacacctaatttatttac-- 18091787  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcat 142  Q
     ||||||||||||||||||| |||||||||||| |||||    
T  18091788 -tttcttcttcttcttccctcatcttcatctaccttcat 18091825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 17356471 - 17356610
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||||||||||||| || ||||||      
T  17356471 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctagttcatttac-- 17356568  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     ||||||||||||||||||| |||||||||| |||||||||||    
T  17356569 -tttcttcttcttcttccctcatcttcatcttcattcatcctt 17356610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 8815365 - 8815220
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||||||| |||        | ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8815365 tccaattttgataattttaatcctctaaaaaaaaaaaccgttggattacggaggtctatcagattttatagtgtatcaccaacaccaaatttatttactt 8815266  T
Q  104 atttcttcttctt---cttccctaatcttcatctacattcatcctt 146  Q
      |||||||||||   ||||||| ||||||||||||||||||||||    
T  8815265 tcttcttcttcttcttcttccctcatcttcatctacattcatcctt 8815220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 22621977 - 22622113
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||     
T  22621977 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccgacaccgaatttatttact- 22622075  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
         ||||||||||||||| ||||||||||||||||||||||    
T  22622076 -----ttcttcttcttccctcatcttcatctacattcatcctt 22622113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 34095667 - 34095528
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||| ||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34095667 tccaattttgataattttaatcccctaaaaaaggagaccgttgaattacggaggtctatcagattttatagtgtatcacccacacctaatttatttactt 34095568  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
      ||||||||   ||||| | ||||||||||||||||||||||    
T  34095567 tcttcttctt---cttccatcatcttcatctacattcatcctt 34095528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 38032428 - 38032301
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38032428 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttactt 38032329  T
Q  104 atttcttcttcttcttccctaatcttcatct 134  Q
       ||||||||||||||| | ||||||||||    
T  38032328 ---tcttcttcttcttccatcatcttcatct 38032301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 23757981 - 23757862
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| ||        |||||||||| ||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  23757981 tgatccaattttgataattttaatcctccaaaaaaagagaccgttgaattacggaggtctatcagattttatggtgtatcaccaacacctaatttattta 23757882  T
Q  101 cttatttcttcttcttcttc 120  Q
    |||  |||||||||||||||    
T  23757881 ctttcttcttcttcttcttc 23757862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 22623151 - 22623018
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||| ||||||||||||| ||||||||||||||     
T  22623151 tccaattttgataattttaatcccctacaaaaagagaccgttggattacggaggtctatcagattttataatgtatcaccaacatctaatttatttact- 22623053  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatc 143  Q
          |||||||||||||| |||||||||||||||||||    
T  22623052 -----ctcttcttcttccctcatcttcatctacattcatc 22623018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 35927127 - 35927013
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||||||||||||||||| ||        ||| ||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||    
T  35927127 tgatccaattttgataattttaatctcctaaaaaaaaagatcgttggattacgaaggtctaccagattttatagtgtatcaccaacacctaatttattta 35927028  T
Q  101 cttatttcttcttct 115  Q
    |||  ||||||||||    
T  35927027 ctttcttcttcttct 35927013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 35925798 - 35925926
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||| |||||||||||||||||||||||        |||| |||||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||    
T  35925798 tgatcaaattttgataattttaatcttctaaaaaaaaagactgttggattacggagatctatcagattttatagtgtatcgtcaacacctaatttattta 35925897  T
Q  101 cttatttcttcttcttcttccctaatcttcat 132  Q
    |   |||||||||||||| |||| ||||||||    
T  35925898 c---tttcttcttcttctcccctcatcttcat 35925926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 7261551 - 7261435
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||        ||||| ||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7261551 tccaattttgataattttaatcccctaaaaaaatagaccattggattacgaaggtctataagattttatagtgtatcaccaacacctaatttatttactt 7261452  T
Q  104 atttcttcttcttcttc 120  Q
      |||||||||||||||    
T  7261451 tcttcttcttcttcttc 7261435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 56234978 - 56234890
Alignment:
Q  55 aggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||| ||||||  | ||||| ||||||||||||||||    
T  56234978 aggtctatcagattttataatgtatcaccaacacctaatttatttac---tttcttcttattcttctttcatctttatctacattcatcctt 56234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 8814278 - 8814358
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactta-tttcttcttcttc 117  Q
    |||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  8814278 agactgttggattacggaggtctatcagattttatagtgtaacaccaacacctaatttatttatttactttcttcttcttc 8814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 38031312 - 38031388
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  38031312 agaccgttgaattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttactttcttcttcttc 38031388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 10804169 - 10804076
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||||  |||||||||||||||||| ||||||||| |||| ||||||||||||||   ||||||| |||||||| || ||||||||||    
T  10804169 agaccgttggattacggaggtctatcagattttacagtgtatcatcaacgcctaatttatttac---tttcttcatcttcttctctcatcttcatct 10804076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 10803032 - 10803138
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttctt-cttcttcttccctaatcttcatcta 135  Q
    |||||||||||||||  ||||| |||||||||||||| ||||||||||||||| |||||||||||||  ||||| | || |||||    |||||||||||    
T  10803032 gagaccgttggattacggaggtttatcagattttatattgtatcaccaacaccgaatttatttactttcttcttccctcatcttc----atcttcatcta 10803127  T
Q  136 cattcatcctt 146  Q
    |||||||||||    
T  10803128 cattcatcctt 10803138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 36074764 - 36074666
Alignment:
Q  42 cgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattca 141  Q
    ||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||| ||   |||||||   ||||||| ||||||||||| |||||    
T  36074764 cgttggattacgaaggtctatcatattttatagtgtatcaccaacacctaatttatttaatttcctcttctt---cttccctcatcttcatctaaattca 36074668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 48501299 - 48501222
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||| |||||  ||||||| ||||||||||| |||||||| |||||||||||||||||||||  |||||||||    
T  48501299 gagaccgttagattacggaggtctgtcagattttattgtgtatcatcaacacctaatttatttactttcttcttcttc 48501222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 48499474 - 48499586
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||| |||||||||| |||||||||||||||||||  |||||||||||||| ||||||| |||||||    
T  48499474 tccaattttgataattttaatcccctaaaaaaagagatcgttggattacagaggtctatcagattttacggtgtatcaccaacatctaattt-tttactt 48499572  T
Q  104 atttcttcttcttc 117  Q
      ||| ||||||||    
T  48499573 tattcatcttcttc 48499586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 5433382 - 5433305
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    ||||| |||| ||||  |||||||||||||||||||| |||||||| |||||||||||||||||   ||||||||||||||    
T  5433382 gagactgttgtattacggaggtctatcagattttataatgtatcacaaacacctaatttattta---atttcttcttcttc 5433305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17357874 - 17357778
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttat 97  Q
    |||||||||||||||||||||||||| ||       |||||||||| ||||  |||||||| ||||||||||| ||||||| ||| || ||||||||    
T  17357874 tgatccaattttgataattttaatctcctgaaaaaagagaccgttgaattacggaggtctaccagattttataatgtatcagcaatacttaatttat 17357778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 48081525 - 48081466
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttctt 113  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||||  ||||||||    
T  48081525 gaggtctttcagagtttataatgtatcaccaacacctaatttatttactttcttcttctt 48081466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 48081355 - 48081289
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||  |||  ||||| ||| |||||| |||||||||||||||||||||||||||||    
T  48081355 gagaccgttggattccagatatctatgagagtttatactgtatcaccaacacctaatttatttactt 48081289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 56233878 - 56233943
Alignment:
Q  64 agattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcat 132  Q
    ||||||||||||||||| ||||||||||||||||||||   |||||||||| |||| ||| ||||||||    
T  56233878 agattttatagtgtatcgccaacacctaatttatttac---tttcttcttcctctttcctcatcttcat 56233943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 34122796 - 34122691
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||| |||||||| |  ||| |||||||||| |||||||||||||||||||| | ||||||||||||  ||| | ||||||| |    |||||||||| |    
T  34122796 gagaacgttggataagggagatctatcagatcttatagtgtatcaccaacacttgatttatttactttcttcatgttcttctcc----atcttcatcttc 34122701  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  34122700 attcatcctt 34122691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 37642518 - 37642419
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactta--tttcttcttcttcttccctaatcttcatct 134  Q
    |||||| |||||| |  ||||| |||||||| | || ||||||||||||||||| |||||||   |||  ||||||| ||||||||||| ||||||||||    
T  37642518 gagaccattggataaatgaggtttatcagatctaattgtgtatcaccaacacctgatttattattttacttttcttcatcttcttccctcatcttcatct 37642419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 49923743 - 49923638
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt-acttatttcttcttcttcttccctaatcttcatcta 135  Q
    |||||||||||||    |||||||||||||| | |  ||||||||||||||| | |||||||| ||||  |||||| ||||||||||| ||||||||||     
T  49923743 gagaccgttggatagatgaggtctatcagatctaactgtgtatcaccaacacgtgatttattttactt--ttcttcatcttcttccctcatcttcatctt 49923646  T
Q  136 cattcatc 143  Q
    ||| ||||    
T  49923645 catacatc 49923638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 48462978 - 48462912
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||| ||||||||||  ||| |||||||||| ||||| ||||||| |||||| | ||||||||||||    
T  48462978 gagatcgttggattagggagatctatcagatcttatactgtatcatcaacacatgatttatttactt 48462912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 9392823 - 9392678
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  9392823 tccaattttgataattttaatcccctagaaaaagagaccgttggattacagaggtctatcagattttatagtgtatcaccggcacctaatttatttactt 9392724  T
Q  104 atttcttcttctt---cttccctaatcttcatctacattcatcctt 146  Q
      |||||||||||   ||||||| ||||||||||||||||||||||    
T  9392723 tcttcttcttcttcttcttccctcatcttcatctacattcatcctt 9392678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 43113784 - 43113923
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |      
T  43113784 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacagaggtctatcagattttatagtgtatcaccagcacctaatttatttgc-- 43113881  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     ||||||||||||||||| | |||||||||| |||||||||||    
T  43113882 -tttcttcttcttcttccatcatcttcatcttcattcatcctt 43113923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 43961040 - 43961180
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| |||        |||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||    
T  43961040 tgatccaattttgataattttaatcctctacaaaaacagaccgttggattacaaaggtctatcagattttatagtgtatcactaacacctaatttattta 43961139  T
Q  101 cttatttcttcttcttcttccctaatcttcatctacattcatccttt 147  Q
    ||      ||||||||||||||| ||||||||||||| |||||||||    
T  43961140 ct------ttcttcttcttccctcatcttcatctacactcatccttt 43961180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 18788568 - 18788428
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||||||| |||        ||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||      
T  18788568 tccaattttgataattttaatcctctaaaaaaatagaccgttggattacgaaggtctatcagattttataatgtatcaccaacacctaatttatttac-- 18788471  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatccttt 147  Q
     |||||||||||  |||||| |||||||||||||||||||||||    
T  18788470 -tttcttcttctctttccctcatcttcatctacattcatccttt 18788428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 32518556 - 32518662
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  || |  ||||| |||||||||||||||||||||| ||    
T  32518556 agaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattccctca--tcttcatcttcttccctaatcttcatcttca 32518653  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  32518654 ttcatcctt 32518662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 29186807 - 29186909
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||||| ||||||||||||    
T  29186807 gagaccgtaggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta---ttttcttctttttcttccctcatcttcatctac 29186903  T
Q  137 attcat 142  Q
    ||||||    
T  29186904 attcat 29186909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 45400018 - 45399879
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45400018 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacgaaggtctatcagattttatagtgtatcactaacacctaatttatttactt 45399919  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
      ||||||||   ||||| | ||||||||||||||||||||||    
T  45399918 tcttcttctt---cttccttcatcttcatctacattcatcctt 45399879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 12630677 - 12630813
Alignment:
Q  7 aattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatt 106  Q
    |||||||||||||||||||  ||       ||||| ||||||||| |||||| |||||||||||||  || ||||| ||||||||||||||||||   ||    
T  12630677 aattttgataattttaatcccctagaaaaagagactgttggattacagaggtatatcagattttattatggatcactaacacctaatttatttac---tt 12630773  T
Q  107 tcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  12630774 tcttcttcttcttccctcatcttcatctacattcatcctt 12630813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 18787258 - 18787397
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||        ||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||||||||      
T  18787258 tccaattttgataattttaatcccctaaaaaaatagaccgttggattacggaggtttatcagattttatggtgtatcaccaacacttaatttatttac-- 18787355  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     ||||||||||||||||||| || ||||||||||| |||||||    
T  18787356 -tttcttcttcttcttccctcatattcatctacatccatcctt 18787397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 29188038 - 29187928
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29188038 tccaattttgataattttaatcccctaaaaaaagagaccgttggattgcagaggtctatcagattttatagtgcatcaccaacacctaatttatttactt 29187939  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  29187938 tcttcttcttc 29187928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 44417567 - 44417684
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       ||||  |||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44417567 tccaattttgataattttaatcccctaaaaaaagagattgttggattacggaggtctatcagattttatagtctatcaccaacacctaatttatttactt 44417666  T
Q  104 atttcttcttcttcttcc 121  Q
      ||||||||||||||||    
T  44417667 tcttcttcttcttcttcc 44417684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 48793527 - 48793414
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||||||||||||||||| ||       ||||||||||||||| | |||| ||| |||||||||||||||||||||||||| ||||||||||    
T  48793527 tgatccaattttgataattttaatctcctaaaaaaagagaccgttggattacaaaggtgtataagattttatagtgtatcaccaacaccaaatttattta 48793428  T
Q  101 cttatttcttcttc 114  Q
    |||  |||||||||    
T  48793427 ctttcttcttcttc 48793414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 13597255 - 13597378
Alignment:
Q  6 caattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttat 105  Q
    |||||||||||||||||||| |||       || | ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||   |    
T  13597255 caattttgataattttaatcctctaaaaaaagatatcgttggattagggaggtctataagattttatagtgtatcaccaacacctaatttatttac---t 13597351  T
Q  106 ttcttcttcttcttccctaatcttcat 132  Q
    |||||||||||||||| | ||||||||    
T  13597352 ttcttcttcttcttccatcatcttcat 13597378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 37237203 - 37237097
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||| ||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||   ||||||| || |||||| | |||||||||| |    
T  37237203 gagatcgttggattacggaggtctatcagattttatagtgtatgaccaacacctaatttatttac---tttcttcatcatcttccatcatcttcatcttc 37237107  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  37237106 attcatcctt 37237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 44231818 - 44231727
Alignment:
Q  55 aggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||| |||||||||| |||||| ||||    
T  44231818 aggtctaccagattttatagtgtatcaccaacacctgatttatttactttcttcctcttcttcttccctcatcttcatcttcattcaacctt 44231727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 19217770 - 19217847
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  19217770 gagaccgttggattacggaggtctatcggattttatagtgtatcaccaacacctaatttatttactttcttcttcttc 19217847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 44748571 - 44748461
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       ||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748571 tccaattttgataattttaatcccctagaaaaggagactgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 44748472  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  44748471 tcttcttcttc 44748461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 7011778 - 7011858
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttct 118  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  7011778 agaccgttggattacggaggtctataagattttatagtgtatcaccaacacctaatttatttactttattcatcttcttct 7011858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 7027136 - 7027216
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttct 118  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  7027136 agaccgttggattacggaggtctataagattttatagtgtatcaccaacacctaatttatttactttattcatcttcttct 7027216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 43962580 - 43962456
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||||||||| |||        ||||||||||||||   ||||||||||||||||||||| |||||| ||||||||||||||||     
T  43962580 tgatccaattttgataattttaatcatctaaaaaaacagaccgttggattacgaaggtctatcagattttatagtatatcactaacacctaatttatttc 43962481  T
Q  101 cttatttcttcttcttcttccctaatct 128  Q
    |||   ||||||||||||||||| ||||    
T  43962480 ctt---tcttcttcttcttccctcatct 43962456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 9391631 - 9391754
Alignment:
Q  6 caattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttat 105  Q
    |||||||||||||||||||| | |       |||||||||||||||   ||||||||||||||||||||||||||| ||||||| |||||||||||   |    
T  9391631 caattttgataattttaatcctttaaaaaaagagaccgttggattacgaaggtctatcagattttatagtgtatcatcaacaccaaatttatttac---t 9391727  T
Q  106 ttcttcttcttcttccctaatcttcat 132  Q
    |||||||||||||||| | ||||||||    
T  9391728 ttcttcttcttcttccatcatcttcat 9391754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 27072626 - 27072548
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttct 118  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||  ||| |||||||||    
T  27072626 accgttggattacagaggtctataagattttatagtttatcaccaacacctaatttatttactttattcatcttcttct 27072548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 27205687 - 27205765
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttct 118  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||  ||| |||||||||    
T  27205687 accgttggattacagaggtctataagattttatagtctatcaccaacacctaatttatttactttattcatcttcttct 27205765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 26005494 - 26005588
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||||| | |||||||| ||||||||||||||||||||||||| |||||||| |||   ||||||| |||||||| || ||||||||||    
T  26005494 gagaccgttggattacaaaggtctataagattttatagtgtatcaccaacacgtaatttatgtac---tttcttcatcttcttctctcatcttcatct 26005588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 37235944 - 37236033
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||||   |||  |||||||||||||  ||||||||||||||||||||||    
T  37235944 gaggtcaatcagattttacaatgtatcaccaacacctaatttatttac---tttactcttcttcttcccacatcttcatctacattcatcctt 37236033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48792550 - 48792652
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||| |||||||||||||||||||| ||       ||||||||||||||| |  ||| ||| |||||||||||||||||||||||||| ||||||||||    
T  48792550 tgatctaattttgataattttaatctcctaaaaaaagagaccgttggattacaagggtgtataagattttatagtgtatcaccaacaccaaatttattta 48792649  T
Q  101 ctt 103  Q
    |||    
T  48792650 ctt 48792652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 9357754 - 9357665
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||||   ||||||| ||||||| ||| |||||||||| |||||| ||||    
T  9357754 gaggtttaccagatcttatagtgtatcaccaacacctaatttatttac---tttcttcatcttctttcctcatcttcatcttcattcaacctt 9357665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 13599226 - 13599152
Alignment:
Q  43 gttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    |||||||||  ||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||| |||||    
T  13599226 gttggattacggaggtctatcagattttatagtgtatcagtaacacctaatttatttactttcttcttcatcttc 13599152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 43115061 - 43114956
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    ||||||||||||||  || |||||||||||||||||||| |||| ||  |||||||||||||||||  ||||||||   ||||||| |||||||| | ||    
T  43115061 agaccgttggattactgaagtctatcagattttatagtgcatcatcataacctaatttatttactttcttcttctt---cttccctcatcttcattttca 43114965  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  43114964 ttcatcctt 43114956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 44230570 - 44230625
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaa 92  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  44230570 gagaccgttggattacagaggtctatcagattttacagtgtatcatcaacacctaa 44230625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 44420494 - 44420421
Alignment:
Q  40 accgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||   ||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||||    
T  44420494 accgttggattacgaaggtctatcagattt-atagtgtatcaccaacatctaatttatttactttcttcttcttc 44420421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 44746869 - 44746931
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt 99  Q
    |||||||||||||||  ||||||||||| |||||||||||||| | |||||||||||||||||    
T  44746869 gagaccgttggattacggaggtctatcatattttatagtgtattatcaacacctaatttattt 44746931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 3538548 - 3538482
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||  ||| ||||||| ||||||  |||||||||||||| |||||||||||||||    
T  3538548 gagaccgttggattacggagatctatcaaattttacggtgtatcaccaacatctaatttatttactt 3538482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 19218959 - 19218897
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt 99  Q
    ||||||||||||| | ||||||| || |||||| | |||||||||||||||||||||||||||    
T  19218959 gagaccgttggataaaagaggtccatgagatttaacagtgtatcaccaacacctaatttattt 19218897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 22794300 - 22794206
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatc 133  Q
    |||| |||||||| |  |||||||||||||| | || |||||||||||||| || |||||||| ||  ||||||| ||||||||||| |||||||||    
T  22794300 gagatcgttggataaatgaggtctatcagatctaattgtgtatcaccaacatctgatttattttct--tttcttcatcttcttccctcatcttcatc 22794206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 47536827 - 47536771
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatt 94  Q
    |||||||||||| | ||||||||||||||| | || |||||||||||||||||||||    
T  47536827 agaccgttggataaaagaggtctatcagatctaatggtgtatcaccaacacctaatt 47536771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 36395975 - 36396051
Alignment:
Q  61 atcagattttatagtgtatcaccaacacctaatttatt-tacttatttcttcttcttcttccctaatcttcatctacat 138  Q
    ||||||||| | ||||||||||||||| |||||||||| ||||  ||||||| ||||||||||  ||||||||||||||    
T  36395975 atcagatttaacagtgtatcaccaacatctaatttattatact--tttcttcatcttcttcccacatcttcatctacat 36396051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 45398683 - 45398746
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    ||||| ||||| || ||||||||||||||||||| |||||||||||||||  ||| ||||||||    
T  45398683 gaggtttatcaaatcttatagtgtatcaccaacatctaatttatttactttcttcatcttcttc 45398746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 13750644 - 13750545
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||        ||||||||||||||   |||||||| |||||||||||||||||| || || ||||||||| |||||    
T  13750644 tccaattttgataattttaatcccctaaaaaaacagaccgttggattacgaaggtctattagattttatagtgtatcatcatcaactaatttatatactt 13750545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 32519724 - 32519658
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||| ||||   ||||||| |||||| |||||||| ||||||||||||||||| |||||||    
T  32519724 gagaccgttgaattacgaaggtctaccagattgtatagtgtgtcaccaacacctaatttttttactt 32519658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 29409216 - 29409151
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttact 102  Q
    ||||||||||||| |  ||| |||||||||| | | ||||||| ||||||||||||||||||||||    
T  29409216 gagaccgttggataaatgagatctatcagatctaacagtgtataaccaacacctaatttatttact 29409151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 13749116 - 13749208
Alignment:
Q  7 aattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||||| |||       |||||||||| ||||   |||||||| | ||||  |||||||||||||||||||||||||||||    
T  13749116 aattttgataattttaatcctctaaaaaatgagaccgttgaattacgtaggtctataaaatttc-tagtgtatcaccaacacctaatttattta 13749208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 45689023 - 45689055
Alignment:
Q  71 atagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||||| ||||||||||||||    
T  45689023 atagtgtatcaccaacacttaatttatttactt 45689055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 3000 - 2893
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    |||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  3000 agaccgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttactt-ttttttcttcttcttccctcatcttcatctaca 2902  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  2901 ttcatcctt 2893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 1931 - 2017
Alignment:
Q  57 gtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |||||| |||||||  |||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||    
T  1931 gtctattagattttccagtgtatcaccaacacctaatttatttac---tttcttcttcttcttccctcatcttcatctacattcatcctt 2017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 104411 - 104500
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||    
T  104411 gaggtctatcagattttatagtgtatcaccaacatctaatttatttac---tttcttcttcttcttccctcatcttcatctacattcatcctt 104500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 34996769 - 34996632
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||| ||        ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||     
T  34996769 tccaattttgataattttaatctcctaaaaaaacagaccgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttact- 34996671  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatccttt 147  Q
         ||||||||||||||| |||||||||||| ||| ||||||    
T  34996670 -----ttcttcttcttccctcatcttcatctaccttcttccttt 34996632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 32349045 - 32348909
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||     
T  32349045 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaatttatttact- 32348947  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
         ||||||||||||| | |||||||||| |||||||||||    
T  32348946 -----ttcttcttcttccatcatcttcatcttcattcatcctt 32348909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 32712465 - 32712601
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  ||||||||||| ||||||||||||| ||||||||||||| |||||||||     
T  32712465 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtaccaccaacacctaacttatttact- 32712563  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
         ||||||||||||||| ||||||||||||||||||||||    
T  32712564 -----ttcttcttcttccctcatcttcatctacattcatcctt 32712601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 34995495 - 34995600
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    |||||||| |||||   ||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||| |||||||||| ||    
T  34995495 agaccgttagattacgaaggtctatcagattttatagtgtatcaccaacatctaatttatttac---tttcttcttcttcttccctcatcttcatctgca 34995591  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  34995592 ttcatcctt 34995600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 11801350 - 11801211
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||||||||||||||  ||||||||||| ||||||||||||||||  ||||||||||||||||||      
T  11801350 tccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcattaacacctaatttatttac-- 11801253  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
     |||||| |||||||||| | |||||||||| |||||||||||    
T  11801252 -tttcttattcttcttccatcatcttcatctccattcatcctt 11801211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 32347918 - 32348031
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       |||| ||||||||||  | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  32347918 tccaattttgataattttaatcccctaaaaaaagagaacgttggattacgggggtctatcagattttatagtgtatcatcaacacctaatttatttactt 32348017  T
Q  104 atttcttcttcttc 117  Q
      ||||||||||||    
T  32348018 tcttcttcttcttc 32348031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 27719878 - 27719941
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  27719878 gagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 27719941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 21094512 - 21094614
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    ||||||||||||||||| |||||||  ||       |||||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||||    
T  21094512 tgatccaattttgataactttaatcccctaaaaaaagagaccgttggattacggaggtctactagattttatagtgtatcaccaacacctaatttattta 21094611  T
Q  101 ctt 103  Q
    |||    
T  21094612 ctt 21094614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 32713891 - 32713781
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||       | |||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  32713891 tccaattttgataattttaatcccctaaaaaaagtgaccgttggattacggaggtctataagattttacagtgtatcaccaacacctaatttatttactt 32713792  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  32713791 tcttcttcttc 32713781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 3000801 - 3000667
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||  ||        ||| ||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||     
T  3000801 tccaattttgataattttaatcccctaaaaacacagatcgttggattacgaaggtctatcagattttatagtgtatcactaacacctaatttatttact- 3000703  T
Q  104 atttcttcttcttcttccctaatcttcatctacattcatccttt 147  Q
            |||||||||| | |||||||||||||||||||||||    
T  3000702 --------ttcttcttccatcatcttcatctacattcatccttt 3000667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 18574271 - 18574182
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||   ||||||||||||||||| ||| |||||| |||||| ||||    
T  18574271 gaggtctatcagattttatagtgtaccaccaacaccggatttatttactt---tcttcttcttcttccctcatcctcatcttcattcaacctt 18574182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 21095348 - 21095274
Alignment:
Q  43 gttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttc 117  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  21095348 gttggattacggaggtctaccagattttatagtgtatcaccaacacctaatttatttactttattcttattcttc 21095274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 29477900 - 29477995
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatt---tcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||  |   || |||||||||||||| |||||||||| |||||| ||||    
T  29477900 gaggtctaccagattttatggtgtatcaccaacacctgatttatttactttcttcctcctcttcttcttccctcatcttcatcttcattcaacctt 29477995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 18573033 - 18573104
Alignment:
Q  43 gttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    |||||||||  ||||||||||| |||||| |||||||||||||||| ||||||||||||||  |||||||||    
T  18573033 gttggattacggaggtctatcaaattttacagtgtatcaccaacacataatttatttactttcttcttcttc 18573104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 19383129 - 19383064
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||||||||    |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  19383129 gagaccgttggattacgatggtctatcagattttatagtgtatca-caacatctaatttatttactt 19383064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 7628469 - 7628526
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    |||||||| |||||| ||| |||| ||||||| | |||||||||||||||||||||||    
T  7628469 agaccgttagattatggagatctaccagatttcacagtgtatcaccaacacctaattt 7628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 682403 - 682499
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattt-acttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||| |  |||||||||||||| |    ||||||||||||||| | |||||||| ||||  |||||| ||||||||||| ||||||||||    
T  682403 gagaccgttggataaatgaggtctatcagatctagctgtgtatcaccaacacttgatttattttactt--ttcttcatcttcttccctcatcttcatct 682499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 13561434 - 13561476
Alignment:
Q  55 aggtctatcagattttatagtgtatcaccaacacctaatttat 97  Q
    ||||| ||||||| | |||||||||||||||||||||||||||    
T  13561434 aggtccatcagatctaatagtgtatcaccaacacctaatttat 13561476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 7629758 - 7629676
Alignment:
Q  60 tatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||  ||| |||| ||| |||   |||||||||| |||||| ||||    
T  7629758 tatcagattttatagtgtatctccaacatctaattt-tttactttattcatctttttcctcc---atcttcatcttcattcaacctt 7629676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 27892310 - 27892205
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctaca 137  Q
    |||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||   ||| || |||||||||||| |||||||||||||    
T  27892310 agaccgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatttac---tttttttttcttcttccctcatcttcatctaca 27892214  T
Q  138 ttcatcctt 146  Q
    |||||||||    
T  27892213 ttcatcctt 27892205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 27891269 - 27891355
Alignment:
Q  57 gtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||  |||||||||||||||||||||||||||||   |||||||||||||||||||  |||||||||||||||||||||    
T  27891269 gtctatcagattttccagtgtatcaccaacacctaatttatttac---tttcttcttcttcttccctcgtcttcatctacattcatcctt 27891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 16602869 - 16602945
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  16602869 agaccgttggattacggatgtctatcagattttacagtgtatcaccaacacctaatttatttactttcttcttcttc 16602945  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 5033602 - 5033707
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctac 136  Q
    |||| |||||||| | |||| |||| |||||||||||||||||||||||||  ||||||||||||   ||||||| ||||||||||  |||||||||| |    
T  5033602 gagatcgttggataagagagatctaccagattttatagtgtatcaccaacatttaatttatttac---tttcttcatcttcttccc-catcttcatcttc 5033697  T
Q  137 attcatcctt 146  Q
    ||||||||||    
T  5033698 attcatcctt 5033707  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38242990 - 38243089
Alignment:
Q  1 tgatccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||||||||||||||||| ||       ||||||||||||||| | ||   ||| |||||||||| ||||||||||||||| ||||||||||    
T  38242990 tgatccaattttgataattttaatctcctaaaaaaagagaccgttggattacaaag---tataagattttataatgtatcaccaacaccaaatttattta 38243086  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 38243963 - 38243853
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    ||||||||||||||||||||||| ||       || || ||||||||| | |||| ||| |||||||| ||||||| ||||||||| |||||||||||||    
T  38243963 tccaattttgataattttaatctcctaaaaaaagatactgttggattacaaaggtgtataagattttacagtgtattaccaacaccaaatttatttactt 38243864  T
Q  104 atttcttcttc 114  Q
      |||||||||    
T  38243863 tcttcttcttc 38243853  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 5034810 - 5034744
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||| |||||||| | ||||||||| ||||||||| |||||||||||||||| | ||||||||||||    
T  5034810 gagatcgttggataagagaggtctaacagattttagagtgtatcaccaacacttgatttatttactt 5034744  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 16604167 - 16604078
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    |||||||| |||||||||||||||| |||||||||   ||||||||||||  ||||||||   ||||||| |||||||||| |||||| ||||    
T  16604167 gaggtctaccagattttatagtgtaccaccaacactggatttatttactttcttcttctt---cttccctcatcttcatcttcattcaacctt 16604078  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 12365996 - 12365902
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatc 133  Q
    ||||||||||||| |  ||| |||||||||| | |  ||||||||||||||||| |||||||| ||  ||||||| ||||||||||| |||||||||    
T  12365996 gagaccgttggataaatgagatctatcagatataactgtgtatcaccaacacctgatttattttct--tttcttcatcttcttccctcatcttcatc 12365902  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 44801016 - 44801073
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||||||||||| || ||||||| | |||||||||||||||||| ||||    
T  44801016 agaccgttggattatagaggtttaccagatttcacagtgtatcaccaacacctgattt 44801073  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 23833077 - 23833165
Alignment:
Q  4 tccaattttgataattttaatcttctnnnnnnngagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaa 92  Q
    ||||||||||||||||||||||  ||        ||||||||||||||  ||||||||  |||||||||||||||||| ||||||||||    
T  23833077 tccaattttgataattttaatcccctaaaaaagaagaccgttggattacggaggtctagaagattttatagtgtatcatcaacacctaa 23833165  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 12364345 - 12364420
Alignment:
Q  54 gaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttca 131  Q
    |||||||||||||| | |  ||||||||||||||| |||||||||| ||  ||||||| ||||||||||| |||||||    
T  12364345 gaggtctatcagatctaactgtgtatcaccaacacataatttattttct--tttcttcatcttcttccctcatcttca 12364420  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 26388416 - 26388453
Alignment:
Q  109 ttcttcttcttccctaatcttcatctacattcatcctt 146  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  26388416 ttcttcttcttccctcatcttcatctacattcatcctt 26388453  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 370906 - 370962
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatt 94  Q
    |||||||||||| |  ||||||||||| || | || |||||||||||||||||||||    
T  370906 agaccgttggataaatgaggtctatcaaatctaatggtgtatcaccaacacctaatt 370962  T

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Target: scaffold0349 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 9300 - 9363
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttattta 100  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  9300 gagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattta 9363  T

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Target: scaffold1425 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 277 - 373
Alignment:
Q  37 gagaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttcttcttccctaatcttcatct 134  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||||||  ||| ||||||||||||   ||||||||||    
T  277 gagaccgttggattacagaggtctatcagattttacagcgtatcaccaacacctaattt-tttactttattcatcttcttcttcctccatcttcatct 373  T

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Target: scaffold1425; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 1575 - 1499
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttacttatttcttcttc 114  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||  |||||||||    
T  1575 agaccgttggattatagaggtctatcagattttacggtgtataaccaacacctaatttttttactttcttcttcttc 1499  T

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Target: scaffold0141 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 31177 - 31234
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  31177 agaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 31234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 35259 - 35202
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  35259 agaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 35202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 83635 - 83578
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  83635 agaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 83578  T

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Target: scaffold0049; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 79553 - 79610
Alignment:
Q  38 agaccgttggattatagaggtctatcagattttatagtgtatcaccaacacctaattt 95  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||    
T  79553 agaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 79610  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 25313 - 25253
Alignment:
Q  43 gttggattatagaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 103  Q
    |||||||||  ||||| ||||| |||||||||||||| | |||||||||||||||||||||    
T  25313 gttggattacggaggtttatcacattttatagtgtattatcaacacctaatttatttactt 25253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 1065 - 1006
Alignment:
Q  74 gtgtatcaccaacacctaatttattt-acttatttcttcttcttcttccctaatcttcatct 134  Q
    |||||||||||||||| ||||||||| ||||  |||||| ||||||||||||||||||||||    
T  1065 gtgtatcaccaacaccaaatttattttactt--ttcttcatcttcttccctaatcttcatct 1006  T

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Target: scaffold0081 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 42967 - 42923
Alignment:
Q  55 aggtctatcagattttatagtgtatcaccaacacctaatttattt 99  Q
    ||||| || |||||| | |||||||||||||||||||||||||||    
T  42967 aggtccatgagatttaacagtgtatcaccaacacctaatttattt 42923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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