View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_77 (Length: 298)
Name: NF17063_low_77
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 26 - 290
Target Start/End: Original strand, 11171332 - 11171599
Alignment:
| Q |
26 |
ctttatatatattagtttctaaatgcgtatgcatcaattgattctggtggacgagataaagtcacatgag-----ctgagctactatcgatgaatgatct |
120 |
Q |
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| T |
11171332 |
ctttatatatattagtttctaaatgcgtatgcatcaaatgattctggtggacgagataaagtcacatgagctgagctgagctgctatcgatgaatgatct |
11171431 |
T |
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| Q |
121 |
atcatgtttggaggaatccaatctttgtggaagaaaagttcatagcattgcataacttatttgtagaaattggnnnnnnnnnntgtaaaaggattctatt |
220 |
Q |
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| T |
11171432 |
atcatgtttggaggaatccaatctttgtggaagaaaagttcacagcattgcataacttatttgtagaaattgg--aaaaaaaatgtaaaaggattctatt |
11171529 |
T |
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| Q |
221 |
gaacgggatgtagtgctcaacaaacgtattttaattgaagaaattggaaacaaaatgtaataattgatga |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11171530 |
gaacgggatgtagtgctcaacaaacgtattttaattgaagaaattggaaacaaaatgtaataattgatga |
11171599 |
T |
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