View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_78 (Length: 295)

Name: NF17063_low_78
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_78
NF17063_low_78
[»] chr4 (8 HSPs)
chr4 (23-288)||(38081960-38082225)
chr4 (55-288)||(38086385-38086618)
chr4 (42-288)||(38061661-38061907)
chr4 (62-288)||(38072875-38073101)
chr4 (49-288)||(38058547-38058786)
chr4 (115-265)||(37954232-37954382)
chr4 (225-266)||(38125637-38125678)
chr4 (225-266)||(38129590-38129631)
[»] chr6 (3 HSPs)
chr6 (130-265)||(7001405-7001540)
chr6 (44-156)||(10792940-10793055)
chr6 (227-265)||(10792886-10792924)
[»] chr1 (2 HSPs)
chr1 (44-156)||(34268580-34268695)
chr1 (227-265)||(34268711-34268749)
[»] chr2 (1 HSPs)
chr2 (225-278)||(11811313-11811366)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 38082225 - 38081960
Alignment:
Q  23 agctagaattgttgtctcgccttttttacttgaatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38082225 agctagaattgttgtctcgccttttttacttgaatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccac 38082126  T
Q  123 ttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaatta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38082125 ttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaatta 38082026  T
Q  223 tgactccaaaacttgctcctccaccgcctctaatagcccaaaaataatcttcaccctttgcttctc 288  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  38082025 tgactccaaaacttgctcctccaccacctctaatagcccaaaaataatcttcacccattgcttctc 38081960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 55 - 288
Target Start/End: Complemental strand, 38086618 - 38086385
Alignment:
Q  55 aatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaa 154  Q
    |||||| ||||||  |||||||||| |||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  38086618 aatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaa 38086519  T
Q  155 tgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccgcctcta 254  Q
    || | ||||||| |||||||| |||||  ||| |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  38086518 tgtttttggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctcta 38086419  T
Q  255 atagcccaaaaataatcttcaccctttgcttctc 288  Q
    |||||||||||  |||| |||||| |||||||||    
T  38086418 atagcccaaaagaaatcctcacccattgcttctc 38086385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 42 - 288
Target Start/End: Original strand, 38061661 - 38061907
Alignment:
Q  42 ccttttttacttgaatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttg 141  Q
    |||||||||||| |||||| |||||| |||| || ||  ||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||    
T  38061661 ccttttttacttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgttg 38061760  T
Q  142 cattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcc 241  Q
    ||||||| ||||||| | |||| ||  | ||||| | |||  ||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  38061761 cattttgatccaatgtttttggcacattgaacactgacacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcc 38061860  T
Q  242 tccaccgcctctaatagcccaaaaataatcttcaccctttgcttctc 288  Q
    |||||| |||||||||||||||||| |||| |||||| |||||||||    
T  38061861 tccacctcctctaatagcccaaaaaaaatcctcacccattgcttctc 38061907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 288
Target Start/End: Complemental strand, 38073101 - 38072875
Alignment:
Q  62 cctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctctt 161  Q
    |||||| |||| |||||| ||||||| |||||| |||| ||||   || | | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  38073101 cctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttctt 38073002  T
Q  162 ggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccgcctctaatagccc 261  Q
    ||||| ||||||||||| || |||| |||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  38073001 ggaacagtaaacaccgttacagttgatggaacttgaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagccc 38072902  T
Q  262 aaaaataatcttcaccctttgcttctc 288  Q
    ||||  ||||||||||| |||||||||    
T  38072901 aaaacaaatcttcacccattgcttctc 38072875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 38058786 - 38058547
Alignment:
Q  49 tacttgaatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttg 148  Q
    |||||||||||| |||||| |||| || | | ||  ||| ||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||| ||    
T  38058786 tacttgaatttaccctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattgtg 38058687  T
Q  149 ttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccg 248  Q
    |||||||| | |||||||  | || || |||||  ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  38058686 ttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttccatgaaattatgactccaaaacttgctcctccacca 38058587  T
Q  249 cctctaatagcccaaaaataatcttcaccctttgcttctc 288  Q
    |||||||||||||||||  ||||||||||| |||||||||    
T  38058586 cctctaatagcccaaaacaaatcttcacccattgcttctc 38058547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 265
Target Start/End: Complemental strand, 37954382 - 37954232
Alignment:
Q  115 actgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttcca 214  Q
    |||||||||| |||| |||||| ||||| || ||||||| ||  || | |||| | || |  ||||| |||| |||||| | ||| ||||||| ||||||    
T  37954382 actgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagttttaccttcca 37954283  T
Q  215 tgaaattatgactccaaaacttgctcctccaccgcctctaatagcccaaaa 265  Q
    ||  || || |||||||| |||||||||||||| |||||||||||||||||    
T  37954282 tgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaa 37954232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 38125678 - 38125637
Alignment:
Q  225 actccaaaacttgctcctccaccgcctctaatagcccaaaaa 266  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  38125678 actccaaaacttgctcctccacctcctctaatagcccaaaaa 38125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 38129631 - 38129590
Alignment:
Q  225 actccaaaacttgctcctccaccgcctctaatagcccaaaaa 266  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  38129631 actccaaaacttgctcctccacctcctctaatagcccaaaaa 38129590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 265
Target Start/End: Original strand, 7001405 - 7001540
Alignment:
Q  130 caagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactcc 229  Q
    ||||||||||||||||||| ||||||| | |||| |   | ||||| ||||   ||  |||||||| || |||||| |||||||||||||||||||||||    
T  7001405 caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcc 7001504  T
Q  230 aaaacttgctcctccaccgcctctaatagcccaaaa 265  Q
    |||||||||||||||| | ||||||||||| |||||    
T  7001505 aaaacttgctcctccagcacctctaatagctcaaaa 7001540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 10793055 - 10792940
Alignment:
Q  44 ttttttacttgaatttatcctttgaaagacaatat---tgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgtt 140  Q
    ||||||||||||||||| |||| | |||| || ||   | |||||||||||| |||||||| |||||| || |  |||||| ||||||||||| ||||||    
T  10793055 ttttttacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgtt 10792956  T
Q  141 gcattttgttccaatg 156  Q
    |||||||| |||||||    
T  10792955 gcattttgatccaatg 10792940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 10792924 - 10792886
Alignment:
Q  227 tccaaaacttgctcctccaccgcctctaatagcccaaaa 265  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  10792924 tccaaaacttgctcctccacctcctctaatagctcaaaa 10792886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 34268580 - 34268695
Alignment:
Q  44 ttttttacttgaatttatcctttgaaagacaatat---tgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgtt 140  Q
    ||||||||||||||||| |||| | |||| || ||   | |||||||||||| |||||||| |||||| || |  |||||| ||||||||||| ||||||    
T  34268580 ttttttacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgtt 34268679  T
Q  141 gcattttgttccaatg 156  Q
    |||||||| |||||||    
T  34268680 gcattttgatccaatg 34268695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 34268711 - 34268749
Alignment:
Q  227 tccaaaacttgctcctccaccgcctctaatagcccaaaa 265  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  34268711 tccaaaacttgctcctccacctcctctaatagctcaaaa 34268749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 11811313 - 11811366
Alignment:
Q  225 actccaaaacttgctcctccaccgcctctaatagcccaaaaataatcttcaccc 278  Q
    |||||||| |||| ||||||||| ||||| |||||||||||  |||||||||||    
T  11811313 actccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcaccc 11811366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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