View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17063_low_8 (Length: 661)

Name: NF17063_low_8
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17063_low_8
NF17063_low_8
[»] chr4 (8 HSPs)
chr4 (56-304)||(26869324-26869575)
chr4 (95-295)||(20230155-20230353)
chr4 (58-168)||(26875787-26875897)
chr4 (67-153)||(26599259-26599345)
chr4 (131-209)||(25021002-25021080)
chr4 (368-425)||(26875622-26875679)
chr4 (267-328)||(26875725-26875786)
chr4 (141-182)||(38767150-38767191)
[»] chr3 (3 HSPs)
chr3 (56-346)||(44909776-44910066)
chr3 (221-330)||(12116688-12116794)
chr3 (285-329)||(44909402-44909446)
[»] chr2 (1 HSPs)
chr2 (94-209)||(41575979-41576094)
[»] chr1 (1 HSPs)
chr1 (138-193)||(15840100-15840155)
[»] chr6 (2 HSPs)
chr6 (138-208)||(11172003-11172073)
chr6 (138-197)||(11210828-11210887)
[»] chr8 (1 HSPs)
chr8 (142-205)||(17935419-17935482)
[»] chr7 (1 HSPs)
chr7 (146-209)||(32521571-32521634)
[»] chr5 (1 HSPs)
chr5 (138-198)||(22870836-22870896)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 56 - 304
Target Start/End: Complemental strand, 26869575 - 26869324
Alignment:
Q  56 gcaattgatggattattatggatatgtcatgaataaaa-ttataatatttattatgtttatgagttattccttctgaaagacgaagaatcaaaaccttaa 154  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  26869575 gcaattgatggattattatggatatgtcatgaataaaaattataatatttattatgtatatgagttattgcttctgaaagatgaagaatcaaaaccttaa 26869476  T
Q  155 ataattttgacttcttattttcatatcagatagattgttgaaagaaaatatttaannnnnnnncttgttgattttatgacattgtaataagaccataaac 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||    
T  26869475 ataattttgacttcttattttcatatcagatagattgttgaaagaaaatatttaattttttttcttgttgattttataacattgtaataagaccataaac 26869376  T
Q  255 gcattttaatataaacaatcaa--atatagctactaatactatgacccttta 304  Q
     |||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  26869375 acattttaatataaacaatcaaatatatagctactaatactataacccttta 26869324  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 95 - 295
Target Start/End: Complemental strand, 20230353 - 20230155
Alignment:
Q  95 tataatatttattatgtttatgagttattccttctgaaagacgaagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgttg 194  Q
    |||||||||||||||| ||||||| |||| |||||||||||| ||  |||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  20230353 tataatatttattatgcttatgagctattgcttctgaaagacaaa--atcaaaaccttaaataattttgacttctcattttcgtatcagatagattgttg 20230256  T
Q  195 aaagaaaatatttaannnnnnnncttgttgattttatgacattgtaataagaccataaacgcattttaatataaacaatcaaatatagctactaatacta 294  Q
    |||||||||| ||||        |||||||||||||| |||||||||||  ||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  20230255 aaagaaaatacttaatttatcttcttgttgattttataacattgtaatagaaccataaatacattttaatataaacaatcaaatatacctactaatacta 20230156  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 26875897 - 26875787
Alignment:
Q  58 aattgatggattattatggatatgtcatgaataaaattataatatttattatgtttatgagttattccttctgaaagacgaagaatcaaaaccttaaata 157  Q
    |||| |||||||||| ||||||||||||||| |||| |||||||||| ||| |||||||||||| | ||| |||||||| ||||  ||||||||||||||    
T  26875897 aatttatggattattgtggatatgtcatgaaaaaaactataatattttttacgtttatgagttactgcttatgaaagacaaagatccaaaaccttaaata 26875798  T
Q  158 attttgacttc 168  Q
    ||||| |||||    
T  26875797 attttaacttc 26875787  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 26599259 - 26599345
Alignment:
Q  67 attattatggatatgtcatgaataaaattataatatttattatgtttatgagttattccttctgaaagacgaagaatcaaaacctta 153  Q
    |||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||||  |||||||| ||||||    
T  26599259 attattgtggatatgtcatgaaaacaattataatatttattatgcttattagttattgcttctgaaagacatagaatcaacacctta 26599345  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 25021080 - 25021002
Alignment:
Q  131 aaagacgaagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgttgaaagaaaatatttaa 209  Q
    |||||| ||||||||||||||||||||| || ||||| |  |||| |||||| ||||||||||||||  ||||||||||    
T  25021080 aaagacaaagaatcaaaaccttaaataacttcgacttttctttttaatatcatatagattgttgaaaagaaatatttaa 25021002  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 425
Target Start/End: Complemental strand, 26875679 - 26875622
Alignment:
Q  368 ttatgaaatttgcaataaattttttggacatacataacaactttaatatataagataa 425  Q
    ||||||| ||||||| || ||||||||| | ||||||||||||||||||| |||||||    
T  26875679 ttatgaactttgcaacaacttttttggatagacataacaactttaatatacaagataa 26875622  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 26875786 - 26875725
Alignment:
Q  267 aaacaatcaaatatagctactaatactatgaccctttattaaacaatgttttgcaacattat 328  Q
    |||||||||||||||||||||| || ||| || | ||||||| ||||| |||| ||||||||    
T  26875786 aaacaatcaaatatagctactagtattatcacacgttattaagcaatgatttgtaacattat 26875725  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 38767150 - 38767191
Alignment:
Q  141 aatcaaaaccttaaataattttgacttcttattttcatatca 182  Q
    |||||||||||||||||||||||| |||| ||||||| ||||    
T  38767150 aatcaaaaccttaaataattttgatttctcattttcaaatca 38767191  T

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Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 56 - 346
Target Start/End: Complemental strand, 44910066 - 44909776
Alignment:
Q  56 gcaattgatggattattatggatatgtcatgaataaaattataatatttattatgtttatgagttattccttctgaaagacgaagaatcaaaaccttaaa 155  Q
    |||| |||||||  |||||| |||||||||||| ||| ||||||| |||||||||||||||||||||| |||  ||||||| || ||||||||  |||||    
T  44910066 gcaagtgatggagcattatgtatatgtcatgaaaaaagttataatttttattatgtttatgagttattgcttgcgaaagacaaataatcaaaattttaaa 44909967  T
Q  156 taattttgacttcttattttcatatcagatagattgttgaaagaaaatatttaannnnnnnncttgttgattttatgacattgtaataagaccataaacg 255  Q
    |||||||||||| | |||||||||| ||||||||| ||| ||||||||| ||||        |||||||  ||||| ||||||||||   ||||||||      
T  44909966 taattttgacttttcattttcatatgagatagattattg-aagaaaatacttaa-----tttcttgttggatttataacattgtaatggaaccataaata 44909873  T
Q  256 cattttaat------ataaacaatcaaatatagctactaatactatgaccctttattaaacaatgttttgcaacattatacgtgataaggccataaa 346  Q
    |||||||||      | ||||||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||||  ||||||  |||||||    
T  44909872 cattttaataaaaaaaaaaacaatcaaatatagctactaatactataaccctttactaaacattgatttgcaacattatagatgataaaaccataaa 44909776  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 12116688 - 12116794
Alignment:
Q  221 gttgattttatgacattgtaataagaccataaacgcattttaatataaacaatcaaatatagctactaatactatgaccctttattaaacaatgttttgc 320  Q
    ||||||||||| |||||||||||| ||||||||  |||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||| ||| |    
T  12116688 gttgattttataacattgtaataaaaccataaatacattttaatataaataatcaaatatacctactaa---tataaccctttattaaacaatgatttac 12116784  T
Q  321 aacattatac 330  Q
    ||||||||||    
T  12116785 aacattatac 12116794  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 44909446 - 44909402
Alignment:
Q  285 actaatactatgaccctttattaaacaatgttttgcaacattata 329  Q
    ||||||||||| ||||| || ||||||||| ||||||||||||||    
T  44909446 actaatactataaccctctactaaacaatgatttgcaacattata 44909402  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 41575979 - 41576094
Alignment:
Q  94 ttataatatttattatgtttatgagttattccttctgaaagacgaagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgtt 193  Q
    |||||| |||| ||||| | |||||||||| || |  || ||||| ||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  41575979 ttataaaatttgttatgctcatgagttattgctcccaaaggacgatgaatcaaaatcttaaataatgttaacttcttattttcatatcaaatagattgtt 41576078  T
Q  194 gaaagaaaatatttaa 209  Q
    ||||||||||| ||||    
T  41576079 gaaagaaaatacttaa 41576094  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 15840155 - 15840100
Alignment:
Q  138 aagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgtt 193  Q
    |||||||| ||||||||||||||||| ||||| | |||||||||| ||||||||||    
T  15840155 aagaatcagaaccttaaataattttgccttctcactttcatatcaaatagattgtt 15840100  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 11172003 - 11172073
Alignment:
Q  138 aagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgttgaaagaaaatattta 208  Q
    ||||| |||||| || |||||| || |||||| |||||||||||||||||||| ||||||  |||||||||    
T  11172003 aagaaccaaaactttcaataatctttacttctaattttcatatcagatagattattgaaaagaaatattta 11172073  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 11210828 - 11210887
Alignment:
Q  138 aagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgttgaaa 197  Q
    ||||| |||||| ||||||| | || |||||| |||||||||||||||||||| ||||||    
T  11210828 aagaaccaaaactttaaatactcttcacttctaattttcatatcagatagattattgaaa 11210887  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 17935482 - 17935419
Alignment:
Q  142 atcaaaaccttaaataattttgacttcttattttcatatcagatagattgttgaaagaaaatat 205  Q
    ||||||| || ||||||||||||||||| ||||||| || ||||||||| || |||| ||||||    
T  17935482 atcaaaatctgaaataattttgacttctcattttcaaattagatagattttttaaaggaaatat 17935419  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 32521634 - 32521571
Alignment:
Q  146 aaaccttaaataattttgacttcttattttcatatcagatagattgttgaaagaaaatatttaa 209  Q
    |||||||||||||||||||||||| ||||| | |||| ||||| |  |||||| ||||||||||    
T  32521634 aaaccttaaataattttgacttctcatttttaaatcaaatagactaatgaaaggaaatatttaa 32521571  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 22870896 - 22870836
Alignment:
Q  138 aagaatcaaaaccttaaataattttgacttcttattttcatatcagatagattgttgaaag 198  Q
    ||||||||| | |||||||||||||| |||||||||||  ||| ||||| |||||| ||||    
T  22870896 aagaatcaagatcttaaataattttggcttcttattttattatgagatacattgttaaaag 22870836  T

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