View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17063_low_82 (Length: 281)
Name: NF17063_low_82
Description: NF17063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17063_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 44523687 - 44523960
Alignment:
| Q |
1 |
ccaaaattaacccacgctgttcatttaaaacgagaaccagattctatatttgtctatttatggatttgtttgtcaatctgttgtgaattcatgatcag-t |
99 |
Q |
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| T |
44523687 |
ccaaaattaacccacgctgttcatttaaaacgagaaccagattctatatttgtctatttatggacttgtttgtcaatctgttgtgaattcatgatcaaat |
44523786 |
T |
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| Q |
100 |
attctccaaattgcagttaactttgattcctcactatttttctctgttttattttcatataatttatattgcagaattttaaattattaaacatgattac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44523787 |
attctccaaattgcagttaactttgattcctcactatttttctttgttttattttcatataatttatattgcagaattttaaattattaaacatgattac |
44523886 |
T |
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| Q |
200 |
tcaattccaaatccaaccaacgtgattgcaaattgggatcattgacaaattttagagaatggttgcagaataat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44523887 |
tcaattccaaatccaaccaacgtgattgcaaattgggatcattgacaaattttagagaatggttgctgaataat |
44523960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 5750830 - 5750561
Alignment:
| Q |
1 |
ccaaaattaacccacgctgttcatttaaaacgagaaccagattctatatttgtctatttatggatttgtttgtcaatctgttgtgaattcatgatcagta |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| || |
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| T |
5750830 |
ccaaaattaacccacgctgttcatttaaaaagagaaccaaattccatatttgtctatttatggacttgtttgtcaatctgttgtgccttcatgatcaata |
5750731 |
T |
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| Q |
101 |
ttctccaaattgcagttaactttgattcctcactatttttctctgttttattttcatataatttatattgcagaattttaaattattaaacatgattact |
200 |
Q |
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| T |
5750730 |
ttctccaaattgcggttaactttgattcctcactatttttctttgttttatttttatataatttatattgcagaattttaaattattaaa---aattact |
5750634 |
T |
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| Q |
201 |
caattccaaatccaaccaacgtgattgcaaattgggatcattgacaaattttagagaatggttgcagaataat |
273 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
5750633 |
caattccaaatccaaccaatgtgattgcaaattgggatcattaacaaattttagagaatggttgctgaataat |
5750561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 38367824 - 38367680
Alignment:
| Q |
88 |
ttcatgatcagtattctccaaattgcagttaactttgattcctcactatttttctctgttttattttcatataatttatattgcagaattttaaattatt |
187 |
Q |
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|||||||||| |||||||||| ||||| |||| ||||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38367824 |
ttcatgatcaatattctccaatttgcatttaaatttgattcctcgctgtttttctttgttttatttatatataatttatattgcagaattttaaattatt |
38367725 |
T |
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| Q |
188 |
aaacatgat---tactcaattccaaatccaaccaacgtgattgca |
229 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
38367724 |
aaacatgattaatactcaattccaaatccaaccatcgtgattgca |
38367680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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